Transcript 3466 | MetamORF

Transcript

ID CARD

MetamORF ID

3466

ENST00000526870

Name

NUP160-203

Strand

Biotype

protein_coding

Start-end positions

47839501-47848555

CDS Start-stop positions

47840228-47848420

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:18017

Aliases

ENSG00000030066,
FLJ22583, HGNC:18017, KIAA0197,
NCBI:23279, NUP160, OFF:NUP160

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1988291	69	TTG ...	LGV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, MM1S
916166	36	GCA ...	ALG ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
483579	81	CTG ...	LSA ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
634569	30	ATG ...	MCF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative Downstream sORF	Blood, HEK293, hES, THP-1
285080	93	CTG ...	LPL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231, MM1S
916170	84	GAG ...	ELS ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3465	84	CTG ...	LFA ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Downstream sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
3468	237	TTG ...	LVV ...	Ribo-seq	TTG	strong	17	sORFs_org_Human	Downstream sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
285078	87	TTG ...	LFR ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231, MM1S
907028	99	AGT ...	SDG ...	Ribo-seq	AGT	strong	1	sORFs_org_Human	Downstream sORF	Jurkat
916164	39	TCA ...	SFI ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916168	75	GCG ...	AKG ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
483577	33	TTG ...	LGL ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231

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