Transcript 3378 | MetamORF

Transcript

ID CARD

MetamORF ID

3378

ENST00000532773

Name

NUP160-211

Strand

Biotype

retained_intron

Start-end positions

47784664-47787079

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:18017

Aliases

ENSG00000030066,
FLJ22583, HGNC:18017, KIAA0197,
NCBI:23279, NUP160, OFF:NUP160

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3377	45	CTG ...	LPN ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, THP-1
3384	93	TTG ...	LYH ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1724852	114	GTG ...	VEP ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Blood, HEK293, hES
3222134	117	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
634527	42	TTG ...	LEE ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, THP-1
906941	105	GTC ...	VQN ...	Ribo-seq	GTC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1205312	75	ATG ...	MKH ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
3380	51	GTG ...	VPL ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, THP-1
3200266	111	TAC ...	YKV ...	Ribo-seq	TAC	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
3382	63	TTG ...	LSH ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
634529	93	ATG ...	MHQ ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1
3200269	51	CTT ...	LTW ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	Intronic sORF	HEK293
1724844	48	ATG ...	MAT ...	Ribo-seq	ATG	strong	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, MDA-MB-231
1205314	84	GTG ...	VLQ ...	Ribo-seq	GTG		6	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
906933	42	CCT ...	PNW ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
906939	90	TAT ...	YHH ...	Ribo-seq	TAT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1988225	135	TTG ...	LQF ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES
285022	45	CTG ...	LCN ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
3388	120	CTG ...	LER ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, THP-1
906937	72	AAC ...	NKL ...	Ribo-seq	AAC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
634525	48	CTG ...	LGL ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1
634523	42	CTG ...	LAS ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1
906945	54	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Jurkat
906935	60	TCT ...	SHG ...	Ribo-seq	TCT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
906943	147	GAA ...	EAW ...	Ribo-seq	GAA	strong	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
1724838	30	ATG ...	MEC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231

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