Transcript 332755

Transcript

ID CARD

MetamORF ID

332755

ENST00000487674

Name

PRKCB-208

Strand

Biotype

retained_intron

Start-end positions

24174216-24185567

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

HGNC:9395

Aliases

ENSG00000166501,
HGNC:9395, NCBI:5579, OFF:PRKCB,
PKCB, PKCβ, PRKCB,
PRKCB1, PRKCB2

Chr 16

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1758631	36	ATG ...	MNS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	Blood
735934	156	GTG ...	VML ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	Blood, Brain, HeLa, Jurkat
332757	54	TTG ...	LPS ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, Brain, LCL
332765	36	TTG ...	LAC ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Intronic sORF	Blood, LCL
332781	42	CTG ...	LLY ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	Brain, LCL
332775	66	GTG ...	VDW ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Blood, Brain, LCL
332783	39	CTG ...	LYE ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	Brain, LCL
332754	63	CTG ...	LQK ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	Blood, Brain, LCL
332763	45	TTG ...	LPI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, LCL
332773	66	ATG ...	MGS ...	Ribo-seq	ATG		2	sORFs_org_Human	Intronic sORF	Blood, LCL
332779	39	TTG ...	LES ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL
332761	63	CTG ...	LRD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, LCL
332789	42	ATG ...	MKM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, LCL
332769	33	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL
735936	99	CAC ...	HNV ...	Ribo-seq	CAC		1	sORFs_org_Human	Intronic sORF	Jurkat
332759	39	CTG ...	LFF ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, LCL, THP-1
332777	30	TTG ...	LVG ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Intronic sORF	Blood, LCL
954822	84	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	Brain
332785	72	CTG ...	LSY ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	Blood, LCL
332771	81	TTG ...	LLI ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, Brain, LCL
332787	54	TTG ...	LKG ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Intronic sORF	Blood, LCL

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