Transcript 332708

Transcript

ID CARD

MetamORF ID

332708

ENST00000482000

Name

PRKCB-206

Strand

Biotype

processed_transcript

Start-end positions

24092790-24111321

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

HGNC:9395

Aliases

ENSG00000166501,
HGNC:9395, NCBI:5579, OFF:PRKCB,
PKCB, PKCβ, PRKCB,
PRKCB1, PRKCB2

Chr 16

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
332714	99	CTG ...	LKL ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
954808	48	TTG ...	LGF ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	Blood, Brain
337915	135	CTG ...	LSV ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
741784	84	GGA ...	GSL ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
956831	108	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	Brain
332726	135	CTG ...	LKE ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
332707	54	ATG ...	MLK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
332724	81	ATG ...	MQS ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
735930	57	GGA ...	GSL ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
332712	120	CTG ...	LSD ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
332710	42	TTG ...	LYL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	ncRNA sORF	Blood, LCL
332728	108	CTG ...	LSV ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
337913	162	CTG ...	LKE ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
332716	93	CTG ...	LIP ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
332732	81	TTG ...	LTS ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
954806	51	TTG ...	LSF ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	Blood, Brain
954810	39	CTG ...	LNF ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	Blood, Brain
332730	30	TTG ...	LGL ...	Ribo-seq	TTG	strong	5	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, LCL, THP-1
332734	72	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	Blood, Brain, LCL
332722	30	ATG ...	MRH ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	LCL
332720	39	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	LCL
332718	84	GTG ...	VRA ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	Blood, LCL

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