Transcript 3326297

Transcript

ID CARD

MetamORF ID

3326297

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:6752

Aliases

CD-M6PR,
CD-MPR, ENSG00000003056, HGNC:6752,
M6PR, NCBI:4074, OFF:M6PR

Chr 12

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3326308	402	ATG ...	MFP ...	Ribo-seq	ATG		1	Erhard2018		HFF
3326317	328	ATG ...	MFP ...	Ribo-seq	ATG		1	Erhard2018		HFF
3326305	368	AAG ...	KGV ...	Ribo-seq	AAG		1	Erhard2018		HFF
3326314	75	ATG ...	MLI ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
3020123	213	ATG ...	MVL ...	Predicted	ATG		1	Samandi2017	sORF
3326311	313	GTT ...	V** ...	Ribo-seq	GTT		1	Erhard2018		HFF
3326296	290	CCA ...	PSY ...	Ribo-seq	CCA		1	Erhard2018	sORF	HFF
3326320	276	ATG ...	MFP ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
536498	126	GTG ...	VGH ...	Ribo-seq	GTG		1	Erhard2018	sORF	HFF
3326299	255	GTT ...	VVG ...	Ribo-seq	GTT		1	Erhard2018	sORF	HFF
3326302	834	ATG ...	MFP ...	Ribo-seq	ATG		1	Erhard2018		HFF

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