Transcript 3314636

Transcript

ID CARD

MetamORF ID

3314636

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:3574

Aliases

D5D,
ENSG00000149485, FADS1, FADS6,
FADSD5, HGNC:3574, LLCDL1,
NCBI:3992, OFF:FADS1, TU12

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3314638	372	ATG ...	MHF ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314653	525	GCG ...	AAS ...	Ribo-seq	GCG		1	Erhard2018		HFF
3314680	12	ATG ...	MPA ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
533937	192	ATG ...	MTG ...	Predicted	ATG		1	Samandi2017	sORF
3314635	1506	ATG ...	MGT ...	Ribo-seq	ATG		1	Erhard2018		HFF
1441857	66	ATG ...	MDL ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
3314671	143	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
3314641	495	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314662	327	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314665	685	CGC ...	RQA ...	Ribo-seq	CGC		1	Erhard2018		HFF
3314674	49	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
1821301	96	ATG ...	MSA ...	Predicted	ATG		1	Samandi2017	sORF
3314647	459	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314656	337	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314668	260	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
1821307	99	ATG ...	MSK ...	Predicted	ATG		1	Samandi2017	sORF
3314644	492	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314650	417	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018		HFF
294284	216	ATG ...	MSS ...	Predicted	ATG		1	Samandi2017	sORF
3314659	332	ATG ...	MNS ...	Ribo-seq	ATG		1	Erhard2018		HFF

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