Transcript 3305 | MetamORF

Transcript

ID CARD

MetamORF ID

3305

ENST00000527079

Name

PTPMT1-204

Strand

Biotype

processed_transcript

Start-end positions

47565898-47573461

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:26965

Aliases

DUSP23,
ENSG00000110536, HGNC:26965, MOSP,
NCBI:114971, OFF:PTPMT1, PLIP,
PTPMT1

Chr 11

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1820758	117	ATG ...	MFL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa
284906	87	CTG ...	LHG ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	ncRNA sORF	HeLa, LCL
1724764	135	CTG ...	LGS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231
1820751	63	GTG ...	VFT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
906772	195	CAT ...	HER ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
906795	45	GGA ...	GWD ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
407348	36	ACG ...	TRR ...	Ribo-seq	ACG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
407342	117	GGG ...	GVI ...	Ribo-seq	GGG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
407340	225	ACA ...	TGR ...	Ribo-seq	ACA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
284908	69	ATG ...	MGL ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	ncRNA sORF	HeLa, LCL
3304	159	GTG ...	VHK ...	Ribo-seq	GTG	weak	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
906791	132	GGC ...	GLA ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
1820765	48	CTG ...	LLD ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
1297204	93	TTG ...	LLS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
2313834	42	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
906789	159	CCA ...	PRS ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
284904	141	GTG ...	VEE ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
407344	192	GAA ...	ERG ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	HCT116
906779	228	CTC ...	LST ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
906781	102	GAG ...	ESN ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
1316685	195	TTG ...	LDN ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
906775	81	TTC ...	FLC ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1820767	78	TTG ...	LIQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
1820763	111	ATG ...	MGI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
407346	99	GAG ...	EEY ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	HCT116
906793	54	CAG ...	QIT ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
906783	171	CAA ...	QFA ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1007960	114	GTG ...	VIT ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	guo_2014
1297206	42	CTG ...	LYF ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	BJ, HEK293T, HeLa
1007958	123	GTG ...	VRG ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	guo_2014, HeLa, HFF
284910	60	TTG ...	LSF ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa, LCL
407352	141	GAG ...	EEA ...	Ribo-seq	GAG	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1316683	234	CTG ...	LRL ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
906785	87	CAA ...	QME ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
906777	120	GCA ...	AAA ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
3307	81	CTG ...	LDV ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1007956	141	CTG ...	LVQ ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	guo_2014, HeLa, hES, HFF, loayza_puch_2016
407350	126	AGT ...	SRA ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	ncRNA sORF	HCT116
1820755	129	CTG ...	LAS ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	ncRNA sORF	HeLa

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