Transcript 3304604

Transcript

ID CARD

MetamORF ID

3304604

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:29550

Aliases

ENSG00000177963,
HGNC:29550, NCBI:60626, OFF:RIC8A,
RIC8A, synembryn, synembryn-A

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3304624	549	ATG ...	MEP ...	Ribo-seq	ATG		1	Erhard2018		HFF
3304612	15	ATG ...	MAQ ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
3304627	96	AGG ...	RLK ...	Ribo-seq	AGG		1	Erhard2018	sORF	HFF
3304621	445	ATG ...	MEP ...	Ribo-seq	ATG		1	Erhard2018		HFF
3304636	440	ATG ...	MLL ...	Ribo-seq	ATG		1	Erhard2018		HFF
1722242	138	ATG ...	MLT ...	Predicted	ATG		1	Samandi2017	sORF
1818560	111	ATG ...	MCC ...	Predicted	ATG		1	Samandi2017	sORF
1985982	162	ATG ...	MRK ...	Predicted Ribo-seq	ATG		2	Erhard2018 Samandi2017	sORF	HFF
3304615	159	ATG ...	MEP ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
2309522	141	CTG ...	LPG ...	Ribo-seq	CTG		1	Erhard2018	sORF	HFF
3304618	134	ATG ...	MDV ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
3304630	859	AGT ...	SAC ...	Ribo-seq	AGT		1	Erhard2018		HFF
3304633	1614	ATG ...	MEP ...	Ribo-seq	ATG		1	Erhard2018		HFF
2309524	123	ATG ...	MGI ...	Predicted	ATG		1	Samandi2017	sORF
1511571	123	ATG ...	MGM ...	Predicted	ATG		1	Samandi2017	sORF
633283	45	ATG ...	MVV ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF

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