Transcript 3271 | MetamORF

Transcript

ID CARD

MetamORF ID

3271

ENST00000619920

Name

PSMC3-213

Strand

Biotype

protein_coding

Start-end positions

47418769-47426473

CDS Start-stop positions

47418835-47426279

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:9549

Aliases

ENSG00000165916,
HGNC:9549, NCBI:5702, OFF:PSMC3,
PSMC3, TBP-1, TBP1

Chr 11

ORFs

50 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1319692	135	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1316674	198	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa
284837	42	CTG ...	LGT ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
284845	39	TTG ...	LTW ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
407324	69	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
293682	87	ATG ...	MSW ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
293690	57	TTG ...	LGV ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
293680	78	ATG ...	MPS ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293T, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
284833	39	ATG ...	MGP ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, RPE-1
1439860	39	GTG ...	VGR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, RPE-1
2544088	42	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Overlapping sORF Upstream	HEK293
1316672	180	TTG ...	LES ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa
284849	51	ATG ...	MVP ...	Ribo-seq	ATG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, MDA-MB-231, RPE-1
284841	57	TTG ...	LTV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	guo_2014, HeLa, LCL, loayza_puch_2016
3277	33	TTG ...	LGV ...	Ribo-seq	TTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906685	39	GGA ...	GGD ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906681	30	CAT ...	HPA ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906677	30	CGC ...	RCP ...	Ribo-seq	CGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2313788	63	ATG ...	MGP ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
634471	48	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	THP-1
906679	39	CTC ...	LLS ...	Ribo-seq	CTC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
407332	93	ACT ...	TGQ ...	Ribo-seq	ACT	moderate	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293
293694	105	TTG ...	LSP ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
3270	72	TTG ...	LQP ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
293686	129	TTG ...	LPW ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
284847	48	GTG ...	VPI ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
906675	81	ACC ...	TSK ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
293684	90	TTG ...	LMS ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	guo_2014, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
284853	75	TTG ...	LIL ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
1049434	81	TTG ...	LGR ...	Ribo-seq	TTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
293688	135	ATG ...	MPL ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1309942	60	TTA ...	LIS ...	Ribo-seq	TTA	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
284835	48	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231, RPE-1
3279	39	GTG ...	VTL ...	Ribo-seq	GTG		28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3275	39	TTG ...	LRT ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
3200249	36	CTA ...	LSD ...	Ribo-seq	CTA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
409503	117	TGG ...	WRP ...	Ribo-seq	TGG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HCT116, HEK293
293692	63	GTG ...	VTL ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
409505	126	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1049436	87	ATG ...	MEL ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
284851	66	ATG ...	MTK ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, HeLa, LCL, MDA-MB-231
1049438	102	ATG ...	MRP ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
407328	57	GGC ...	GPR ...	Ribo-seq	GGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
527967	36	CTG ...	LVP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, U2OS
2327182	72	ATG ...	MGP ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
284855	78	ATG ...	MLI ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1316670	135	CTG ...	LVG ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, RPE-1
284839	51	GTG ...	VRR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, Skeletal_muscle
1505569	48	ATG ...	MRR ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231
3200246	39	CCC ...	PGP ...	Ribo-seq	CCC	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293

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