Transcript 3252 | MetamORF

Transcript

ID CARD

MetamORF ID

3252

ENST00000524516

Name

PUM1-213

Strand

Biotype

retained_intron

Start-end positions

31028758-31065695

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:14957

Aliases

ENSG00000134644,
HGNC:14957, KIAA0099, NCBI:9698,
OFF:PUM1, PUM1, PUMH1

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1509700	90	TTG ...	LGE ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, MDA-MB-231
287021	33	CTG ...	LGI ...	Ribo-seq	CTG		13	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, Jurkat, LCL, MDA-MB-231, RPE-1
407375	90	GAT ...	DRG ...	Ribo-seq	GAT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
902364	48	GAT ...	DNI ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
1136845	36	CTG ...	LKS ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1
902433	33	AAA ...	KSI ...	Ribo-seq	AAA		1	sORFs_org_Human	Intronic sORF	Jurkat
1509705	102	ATG ...	MVS ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, MDA-MB-231
1509703	99	GTG ...	VSS ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, MDA-MB-231
902357	96	AGA ...	RTS ...	Ribo-seq	AGA		1	sORFs_org_Human	Intronic sORF	Jurkat
3258	276	TTG ...	LTS ...	Ribo-seq	TTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
287032	156	TTG ...	LQA ...	Ribo-seq	TTG		6	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
3251	147	GTG ...	VDY ...	Ribo-seq	GTG		12	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, RPE-1
287023	75	GTG ...	VEE ...	Ribo-seq	GTG		5	sORFs_org_Human	Intronic sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1
2093212	33	TTG ...	LLW ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	HEK293
902376	63	CGA ...	RWP ...	Ribo-seq	CGA		1	sORFs_org_Human	Intronic sORF	Jurkat
407364	81	GCT ...	AEI ...	Ribo-seq	GCT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
902353	90	TCA ...	SGK ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
2093215	48	ATG ...	MIF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HEK293

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