Transcript 3166 | MetamORF

Transcript

ID CARD

MetamORF ID

3166

ENST00000527213

Name

HSD17B12-204

Strand

Biotype

processed_transcript

Start-end positions

43724039-43840033

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:18646

Aliases

ENSG00000149084,
HGNC:18646, HSD17B12, KAR,
NCBI:51144, OFF:HSD17B12, SDR12C1

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1047267	78	GTG ...	VIQ ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, MM1S
1136682	93	GTG ...	VTC ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, MM1S
906197	33	AAT ...	NWK ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
101646	36	CTG ...	LME ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407257	63	ACT ...	TDG ...	Ribo-seq	ACT		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
3168	39	CTG ...	LNT ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906194	72	ACA ...	TGS ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat
3165	48	ATG ...	MSI ...	Ribo-seq	ATG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
101644	51	TTG ...	LSQ ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
101648	33	ATG ...	MEL ...	Ribo-seq	ATG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101642	72	TTG ...	LLF ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MM1S

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