Transcript 3118 | MetamORF

Transcript

ID CARD

MetamORF ID

3118

ENST00000533643

Name

COMMD9-208

Strand

Biotype

retained_intron

Start-end positions

36274473-36276416

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

HGNC:25014

Aliases

COMMD9,
ENSG00000110442, FLJ31106, HGNC:25014,
HSPC166, NCBI:29099, OFF:COMMD9

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3124	87	GTG ...	VEL ...	Ribo-seq	GTG	strong	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3120	66	CTG ...	LDT ...	Ribo-seq	CTG	strong	23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
905956	33	CGA ...	RDQ ...	Ribo-seq	CGA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
1047224	99	ATG ...	MAW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
905966	87	CAC ...	HRG ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
905978	138	CAA ...	QED ...	Ribo-seq	CAA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
407239	99	TGG ...	WRV ...	Ribo-seq	TGG		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
905984	123	GGA ...	GYQ ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	Jurkat
905958	48	GGC ...	GLG ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3117	45	CTG ...	LGR ...	Ribo-seq	CTG	strong	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1007840	39	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, hES
101617	105	CTG ...	LDW ...	Ribo-seq	CTG		16	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
3128	123	CTG ...	LPR ...	Ribo-seq	CTG		17	sORFs_org_Human	Intronic sORF	Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
3126	114	CTG ...	LVD ...	Ribo-seq	CTG		16	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
905972	111	AAA ...	KPS ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
905968	99	CAT ...	HLS ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
3122	81	CTG ...	LSK ...	Ribo-seq	CTG	moderate	25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
905974	111	AGA ...	RQT ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
905970	30	CCT ...	PPS ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
905976	129	AGA ...	RSQ ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
905987	141	CGA ...	RSG ...	Ribo-seq	CGA		1	sORFs_org_Human	Intronic sORF	Jurkat
1439744	117	CTG ...	LFL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, MDA-MB-231
3221750	81	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
905980	105	AGA ...	RQH ...	Ribo-seq	AGA		1	sORFs_org_Human	Intronic sORF	Jurkat
527541	93	GTG ...	VDI ...	Ribo-seq	GTG		12	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, U2OS
905962	63	ACT ...	TGH ...	Ribo-seq	ACT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
905964	72	GAA ...	ETL ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
905960	60	ACC ...	TML ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
905989	96	TGC ...	CHA ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat

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