Transcript 307551

Transcript

ID CARD

MetamORF ID

307551

ENST00000548596

Name

MCRS1-206

Strand

Biotype

protein_coding

Start-end positions

49564481-49567873

CDS Start-stop positions

-49566731

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

HGNC:6960

Aliases

ENSG00000187778,
HGNC:6960, ICP22BP, INO80Q,
MCRS1, MCRS2, MSP58,
NCBI:10445, OFF:MCRS1, P78

Chr 12

ORFs

6 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1325087	159	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293, HeLa, RPE-1
307550	105	GTG ...	VHS ...	Ribo-seq	GTG		8	sORFs_org_Human	sORF	HAP1, HEK293, HEK293T, HeLa, LCL, RPE-1
307553	111	TTG ...	LGV ...	Ribo-seq	TTG		7	sORFs_org_Human	sORF	HAP1, HEK293, HEK293T, HeLa, LCL, RPE-1
1300389	129	CTG ...	LDR ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, RPE-1
412966	147	CGA ...	RVL ...	Ribo-seq	CGA		1	sORFs_org_Human	sORF	HCT116
1325089	171	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HEK293, RPE-1

Export data