Transcript 299435

Transcript

ID CARD

MetamORF ID

299435

ENST00000552004

Name

RACGAP1-225

Strand

Biotype

protein_coding

Start-end positions

50005358-50025488

CDS Start-stop positions

-50016715

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:9804

Aliases

ENSG00000161800,
HGNC:9804, MgcRacGAP, NCBI:29127,
OFF:RACGAP1, RACGAP1

Chr 12

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
410906	96	AGA ...	RFS ...	Ribo-seq	AGA		1	sORFs_org_Human	sORF	HCT116
3201685	132	TGC ...	CGI ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	HEK293
921600	75	GGC ...	GPG ...	Ribo-seq	GGC		1	sORFs_org_Human	sORF	Jurkat
2096298	48	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	BJ
921592	33	GAT ...	DSA ...	Ribo-seq	GAT		1	sORFs_org_Human	sORF	Jurkat
1050680	30	ATG ...	MSW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	HEK293
921596	135	ATG ...	MCG ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	Jurkat
307624	156	ATG ...	MCG ...	Ribo-seq	ATG		19	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
2094936	105	TTG ...	LGE ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	BJ, RPE-1
484575	30	CTG ...	LSE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	sORF	HEK293T, HeLa, THP-1
1515242	57	CTG ...	LTE ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	BJ, hES, RPE-1
484573	54	CTG ...	LRL ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	BJ, guo_2014, HEK293T
2094934	84	GTG ...	VKG ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF	BJ, hES, MDA-MB-231, RPE-1
2094938	111	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	BJ, MDA-MB-231, RPE-1
299434	66	TTG ...	LRI ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	sORF	BJ, HEK293, HeLa, HFF, LCL, MDA-MB-231, U2OS
1011211	48	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	guo_2014
921590	36	TGC ...	CSC ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	Jurkat
3187770	153	TGC ...	CGI ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	HEK293
1050682	36	CTG ...	LTM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	sORF	HEK293, hES, MDA-MB-231

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