Transcript 299184

Transcript

ID CARD

MetamORF ID

299184

ENST00000553065

Name

DDX23-217

Strand

Biotype

retained_intron

Start-end positions

48832523-48833561

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:17347

Aliases

DDX23,
ENSG00000174243, HGNC:17347, NCBI:9416,
OFF:DDX23, prp28, PRPF28,
SNRNP100, U5-100K

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
921281	84	AGA ...	RSQ ...	Ribo-seq	AGA		1	sORFs_org_Human	Intronic sORF	Jurkat
299183	30	ATG ...	MCW ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Intronic sORF	HeLa, LCL
1997309	228	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES
921287	243	AGC ...	SRC ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	Jurkat
1828224	123	ATG ...	MSR ...	Ribo-seq	ATG		2	sORFs_org_Human	Intronic sORF	HEK293, HeLa
921285	144	TTG ...	LTW ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
299186	33	TTG ...	LMC ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Intronic sORF	HeLa, LCL
2551278	132	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
1140987	165	CTG ...	LEH ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
921277	33	TTG ...	LSR ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, Jurkat, MDA-MB-231
1997314	252	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES
2333707	63	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	MDA-MB-231
1997311	246	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES
1997316	267	CTG ...	LEN ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES
921283	183	CCA ...	PDV ...	Ribo-seq	CCA		1	sORFs_org_Human	Intronic sORF	Jurkat
1828221	69	ATG ...	MRL ...	Ribo-seq	ATG		2	sORFs_org_Human	Intronic sORF	HeLa, MDA-MB-231
1997318	270	GTG ...	VLE ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES
410772	249	GTG ...	VLS ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	HCT116, HeLa, hES, Jurkat
921279	126	GAT ...	DEA ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
1735225	96	CTG ...	LSA ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231
1997307	222	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
1997322	300	GTG ...	VIA ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES
1997320	279	TTG ...	LID ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HeLa, hES

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