Transcript 2978 | MetamORF

Transcript

ID CARD

MetamORF ID

2978

ENST00000529137

Name

FBXO3-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

33755953-33774504

CDS Start-stop positions

33763255-33774497

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:13582

Aliases

ENSG00000110429,
FBA, FBX3, FBXO3,
HGNC:13582, NCBI:26273, OFF:FBXO3

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1987490	48	CTG ...	LTI ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Downstream NMD sORF	HeLa
2983	48	CTG ...	LLL ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
905687	204	TCT ...	SNH ...	Ribo-seq	TCT		1	sORFs_org_Human	NMD sORF	Jurkat
1987492	63	TTG ...	LAA ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Downstream NMD sORF	HeLa
284116	102	GTG ...	VLE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Downstream NMD sORF	BJ, HeLa, LCL, MDA-MB-231
1987497	81	ATG ...	MLW ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Downstream NMD sORF	HeLa, MDA-MB-231
101521	63	CTG ...	LPT ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
2977	90	GTG ...	VEA ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1987495	78	CTG ...	LWK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Downstream NMD sORF	HeLa
407151	81	CCG ...	PLT ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116
101523	78	CTG ...	LTL ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS

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