Transcript 2958 | MetamORF

Transcript

ID CARD

MetamORF ID

2958

ENST00000525763

Name

CD59-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

33698355-33722467

CDS Start-stop positions

33710126-33722445

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:1689

Aliases

16.3A5,
CD59, EJ16, EJ30,
EL32, ENSG00000085063, G344,
HGNC:1689, MIC11, MIN1,
MIN2, MIN3, MSK21,
NCBI:966, OFF:CD59, p18-20

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
101510	84	GTG ...	VDN ...	Ribo-seq	GTG		25	sORFs_org_Human	NMD Overlapping sORF Upstream	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
101499	105	CTG ...	LTA ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte
2960	210	GTG ...	VYN ...	Ribo-seq	GTG	weak	33	sORFs_org_Human	CDS NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
905652	162	ACA ...	TTR ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	CDS NMD sORF	Jurkat
905663	87	TCA ...	SIV ...	Ribo-seq	TCA		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa, Jurkat, THP-1
905665	222	GAC ...	DCK ...	Ribo-seq	GAC		3	sORFs_org_Human	InCDS NMD Overlapping sORF	HeLa, Jurkat, THP-1
2962	30	CTG ...	LQN ...	Ribo-seq	CTG	weak	19	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
101508	75	CTG ...	LFG ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MM1S
407136	189	TTT ...	FDA ...	Ribo-seq	TTT		2	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116, Jurkat
905656	204	AAC ...	NKC ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	CDS NMD sORF	Jurkat
936726	69	TTG ...	LMR ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HEK293, HeLa
936733	54	CTG ...	LAV ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HeLa, hES
101503	63	CTG ...	LLV ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, guo_2014, HeLa, hES, loayza_puch_2016, MM1S
936738	96	CTG ...	LSC ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HeLa, HFF, MM1S
905668	246	TAC ...	YNC ...	Ribo-seq	TAC		3	sORFs_org_Human	InCDS NMD Overlapping sORF	HeLa, Jurkat, THP-1
905670	252	CAG ...	QCY ...	Ribo-seq	CAG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
936723	36	TTG ...	LCV ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain
407138	75	CTG ...	LIL ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HCT116, HEK293, HEK293T, HeLa, Jurkat, MM1S, THP-1
905672	90	TGT ...	CSG ...	Ribo-seq	TGT		4	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, HeLa, Jurkat, THP-1
1439638	66	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa
284095	42	TTG ...	LQF ...	Ribo-seq	TTG	moderate	30	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407134	66	ATG ...	MRV ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HCT116, HEK293, HeLa, Jurkat, THP-1
2957	39	TTG ...	LSI ...	Ribo-seq	TTG	moderate	24	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
905661	201	TGT ...	CSS ...	Ribo-seq	TGT		3	sORFs_org_Human	InCDS NMD Overlapping sORF	HeLa, Jurkat, THP-1
101506	66	CTG ...	LLL ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, guo_2014, HeLa, hES, HFF, loayza_puch_2016, MM1S
936721	30	GTG ...	VSP ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HEK293, MM1S
2616288	171	AAC ...	NDV ...	Ribo-seq	AAC	moderate	2	sORFs_org_Human	CDS NMD sORF	HeLa, THP-1
101501	108	CTG ...	LLT ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
407140	123	CAA ...	QSQ ...	Ribo-seq	CAA		2	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HCT116, Jurkat
936731	255	CTG ...	LQC ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS NMD Overlapping sORF	Brain, guo_2014, HeLa
407131	30	CGA ...	RRH ...	Ribo-seq	CGA	weak	2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat

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