Transcript 295 | MetamORF

Transcript

ID CARD

MetamORF ID

295

ENST00000485065

Name

TRUB1-202

Strand

Biotype

processed_transcript

Start-end positions

114938386-114960000

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:16060

Aliases

ENSG00000165832,
HGNC:16060, NCBI:142940, OFF:TRUB1,
PUS4, TRUB1

Chr 10

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
900624	240	TCT ...	SPE ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
98767	78	CTG ...	LGK ...	Ribo-seq	CTG	strong	12	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, RPE-1, U2OS
1983796	138	GTG ...	VIT ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HeLa
814	207	TTG ...	LKI ...	Ribo-seq	TTG		17	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
278581	30	TTG ...	LEL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
99497	126	TTG ...	LTS ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1129303	48	CTG ...	LEC ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, MDA-MB-231, RPE-1
98765	45	TTG ...	LTS ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, RPE-1
278583	39	CTG ...	LPL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, LCL, RPE-1
99495	159	CTG ...	LVV ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
2092220	33	TTG ...	LLE ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	ncRNA sORF	HEK293
899250	90	GAA ...	ESV ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
294	81	ATG ...	MDQ ...	Ribo-seq	ATG		12	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
899244	222	ACC ...	TKL ...	Ribo-seq	ACC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1314030	117	TTG ...	LKI ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
899248	111	GCC ...	AHF ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1134534	33	TTG ...	LSG ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1
899252	150	TCT ...	SPE ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
899246	150	GTC ...	VLE ...	Ribo-seq	GTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
297	33	TTG ...	LEN ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, LCL, RPE-1

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