Transcript 294013

Transcript

ID CARD

MetamORF ID

294013

ENST00000316059

Name

ZFP91-201

Strand

Biotype

protein_coding

Start-end positions

58579111-58621042

CDS Start-stop positions

58579282-58617706

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:14983

Aliases

ENSG00000186660,
HGNC:14983, NCBI:80829, OFF:ZFP91,
PZF, ZFP91, ZNF757

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3307168	78	ATG ...	MML ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3113956	216	GTG ...	VRV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	hES
2327576	192	ATG ...	MKL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2327578	63	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2327580	57	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
907381	36	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2314675	57	ATG ...	MQA ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1821095	60	ATG ...	MCI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
916214	42	CTC ...	LQF ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916218	87	TCC ...	SLL ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1731684	81	TTG ...	LCS ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
916220	48	TCT ...	SAT ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1821077	93	ATG ...	MVL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1821103	30	ATG ...	MAV ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
294017	75	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
916212	225	CCG ...	PRA ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2688986	72	TTG ...	LEK ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
285487	69	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1512106	171	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
533861	96	ATG ...	MSP ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, U2OS
533863	81	CTG ...	LWT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, U2OS
2688984	75	ATG ...	MLE ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
3307165	24	ATG ...	MHR ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1208406	51	TTG ...	LPI ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231, RPE-1
1821093	39	ATG ...	MGI ...	Ribo-seq	ATG	strong	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1821057	72	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
294012	48	GTG ...	VAL ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, HFF, LCL, MM1S, RPE-1, U2OS
285501	57	ATG ...	MGR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
916216	99	TGT ...	CMS ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1512108	150	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231

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