Transcript 288692

Transcript

ID CARD

MetamORF ID

288692

ENST00000616538

Name

NUMA1-233

Strand

Biotype

protein_coding

Start-end positions

72002873-72035987

CDS Start-stop positions

72003527-72035943

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:8059

Aliases

ENSG00000137497,
HGNC:8059, NCBI:4926, NUMA1,
OFF:NUMA1

Chr 11

ORFs

127 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1508573	180	ATG ...	MPT ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1508567	81	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1508543	54	CTG ...	LGD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
295392	99	CTG ...	LTL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, LCL, MDA-MB-231
295390	42	TTG ...	LTE ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231
1990827	96	ATG ...	MSK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2319106	57	ATG ...	MQT ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
1508594	45	TTG ...	LPV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231
1508559	87	CTG ...	LTA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
288712	81	TTG ...	LRC ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
288724	42	CTG ...	LMR ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, U2OS
288704	144	TTG ...	LAG ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
1727586	90	CTG ...	LSS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
916851	102	TGG ...	WLT ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2319176	36	TTG ...	LLQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
288706	159	GTG ...	VSG ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2319113	48	CTG ...	LRC ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, MM1S
288732	72	GTG ...	VTV ...	Ribo-seq	GTG		9	sORFs_org_Human	Overlapping sORF Upstream	Blood, HAP1, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1727584	72	CTG ...	LRK ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
288700	78	ATG ...	MRV ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231
2329348	96	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2319131	126	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
288694	39	CTG ...	LNG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, LCL, RPE-1
288726	45	TTG ...	LLM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, MM1S, U2OS
1990821	63	CTG ...	LRP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, MM1S
288720	84	GTG ...	VPG ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HAP1, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
1508569	30	ATG ...	MSW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1508584	117	ATG ...	MRL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
1990823	69	CTG ...	LML ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, MM1S
2319151	87	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1513014	75	ATG ...	MET ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
2319185	51	CTG ...	LSW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, MDA-MB-231
1208936	120	ATG ...	MKG ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231
1208940	78	TTG ...	LCA ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293
408504	30	TGG ...	WSD ...	Ribo-seq	TGG	weak	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, Jurkat
1508556	60	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1508552	30	GTG ...	VLW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1508577	57	ATG ...	MRI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1508579	66	GTG ...	VSG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
288708	192	ATG ...	MAC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
3201281	186	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2093329	45	GTG ...	VWS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
2319163	54	TTG ...	LRQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1727578	111	TTG ...	LGR ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2319103	54	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1206783	69	ATG ...	MKG ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1
1206792	93	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Human	Overlapping sORF Upstream	HAP1, RPE-1
1208938	36	ATG ...	MRA ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HeLa, MDA-MB-231
1508586	48	CTG ...	LSG ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231, RPE-1
1508532	78	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa
295388	57	TTG ...	LRS ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HeLa, LCL, MDA-MB-231
3227609	183	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1508563	57	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1732713	75	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1513010	87	ATG ...	MRV ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1508588	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1727573	111	TTG ...	LPW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
636267	84	CTG ...	LTC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	THP-1
288696	45	CTG ...	LKL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, hES, LCL, RPE-1
2329337	96	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2319134	144	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
288702	87	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231
288714	30	GTG ...	VSV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, RPE-1
288728	33	GTG ...	VIS ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1508591	81	CTG ...	LSE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, MDA-MB-231
2319108	63	TTG ...	LPM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
288718	147	CTG ...	LGA ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
3200766	72	GCA ...	AAL ...	Ribo-seq	GCA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
530925	39	CTG ...	LFP ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	hES, MDA-MB-231, U2OS
2319141	120	TTG ...	LQM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1508561	54	CTG ...	LAG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
2685964	36	CTG ...	LTK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
1508571	114	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1508565	63	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1508554	42	CTG ...	LSG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
3224347	60	ATG ...	MTG ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2545893	42	ATG ...	MPP ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES
2319169	75	CTG ...	LPS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
1508545	84	GTG ...	VRS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
2319167	33	ATG ...	MKP ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1206787	30	ATG ...	MRP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231
2545895	60	CTG ...	LSS ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
530931	30	ATG ...	MAL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231, U2OS
288716	36	CTG ...	LRV ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2685966	42	CTG ...	LTL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, RPE-1
2319116	66	ATG ...	MLR ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, MM1S
1727582	66	TTG ...	LKR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1508575	189	CTG ...	LSS ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1990825	72	GTG ...	VLM ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, MM1S
1727580	39	ATG ...	MPW ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
295386	45	GTG ...	VTR ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HeLa, LCL, MDA-MB-231
1048372	132	ATG ...	MMP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293
288691	123	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1822865	60	CTG ...	LSW ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3227605	126	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
288722	39	ATG ...	MRE ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, U2OS
2424983	33	GTG ...	VGS ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HFF, MM1S
1508549	84	GTG ...	VAG ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
3115752	45	TTG ...	LQS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
1727576	51	CTG ...	LPS ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
3224349	72	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2329340	93	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
1508581	75	CTG ...	LPG ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1206785	102	ATG ...	MWK ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HAP1
1208945	93	CTG ...	LWR ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, MDA-MB-231
1732715	90	TTG ...	LPP ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1508547	102	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1513012	96	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
2319136	33	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
3227607	156	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1048374	33	CTG ...	LQT ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
1208943	84	CTG ...	LCC ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, MDA-MB-231
3200763	60	ACA ...	TKS ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2319138	84	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
288698	72	GTG ...	VPR ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231
910847	138	CAT ...	HPA ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2319129	117	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2319165	57	GTG ...	VLR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1822863	48	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
288710	33	CTG ...	LSV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231
2329342	117	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2319158	45	CTG ...	LQM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1513008	81	GTG ...	VPR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
2319153	93	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
3227612	210	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1048370	129	ATG ...	MPR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293
288730	42	CTG ...	LSF ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231

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