Transcript 287810

Transcript

ID CARD

MetamORF ID

287810

ENST00000529532

Name

SART1-204

Strand

Biotype

retained_intron

Start-end positions

65961728-65967316

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:10538

Aliases

Ara1,
ENSG00000175467, HAF, HGNC:10538,
NCBI:9092, OFF:SART1, SART1,
SNRNP110, Snu66

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
909861	60	GCA ...	AGS ...	Ribo-seq	GCA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
2424483	216	TTG ...	LEQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HFF
1726912	69	GTG ...	VPG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, HeLa
287812	66	CTG ...	LQP ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1206370	30	TTG ...	LIP ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Intronic sORF	Blood, HAP1, hES, MDA-MB-231
1507662	267	CTG ...	LSK ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	BJ, hES, HFF
1008642	123	CTG ...	LDD ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa
287818	48	GTG ...	VSA ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	LCL, loayza_puch_2016, RPE-1
2317562	69	CTG ...	LMA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
1206368	36	ATG ...	MPL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, MDA-MB-231
287820	108	ATG ...	MWS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	LCL
909857	36	GGA ...	GDN ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	Jurkat
2317560	117	TTG ...	LKG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Intronic sORF	HeLa, MDA-MB-231
287809	87	ATG ...	MTP ...	Ribo-seq	ATG		7	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
2317558	129	ATG ...	MTK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
287814	93	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	LCL, MDA-MB-231
909863	42	CCC ...	PGW ...	Ribo-seq	CCC		1	sORFs_org_Human	Intronic sORF	Jurkat
287816	51	TTG ...	LVS ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	LCL, RPE-1

Export data