Transcript 2871 | MetamORF

Transcript

ID CARD

MetamORF ID

2871

ENST00000524596

Name

LIN7C-202

Strand

Biotype

protein_coding

Start-end positions

27494898-27506769

CDS Start-stop positions

27498649-27506752

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

HGNC:17789

Aliases

ENSG00000148943,
FLJ11215, HGNC:17789, LIN-7-C,
LIN-7C, Lin7c, LIN7C,
MALS-3, NCBI:55327, OFF:LIN7C,
VELI3

Chr 11

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1819942	60	TTG ...	LST ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
905304	54	AAA ...	KNE ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
2879	114	GTG ...	VKD ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1819939	48	ATG ...	MLE ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
409467	120	AGA ...	REI ...	Ribo-seq	AGA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
2870	30	TTG ...	LKE ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
1819929	84	GTG ...	VLV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
101415	129	CTG ...	LHL ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
905316	48	AGT ...	STT ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
407024	78	AAA ...	KGV ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
283891	51	ATG ...	MGA ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
2881	120	CTG ...	LPV ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
283899	60	TTG ...	LDS ...	Ribo-seq	TTG	strong	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1819923	48	ATG ...	MII ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
407026	75	ATT ...	IGK ...	Ribo-seq	ATT	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
905314	36	AAA ...	KES ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1819927	63	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1819935	126	CTG ...	LDC ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
1819933	117	ATG ...	MVE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
2873	33	GTG ...	VLK ...	Ribo-seq	GTG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
101417	132	TTG ...	LLH ...	Ribo-seq	TTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
407020	48	TTA ...	LWE ...	Ribo-seq	TTA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
7884	66	GTG ...	VEL ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
293141	57	CTG ...	LID ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
3313384	594	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
7882	33	GTG ...	VEI ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
905312	99	ATC ...	ILE ...	Ribo-seq	ATC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
283895	63	TTG ...	LLI ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
481890	72	GTG ...	VEK ...	Ribo-seq	GTG	strong	23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
905306	39	AGC ...	SCR ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
905310	84	AGC ...	SYQ ...	Ribo-seq	AGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
101421	99	TTG ...	LNY ...	Ribo-seq	TTG	weak	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1
293143	60	TTG ...	LLI ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
283901	87	TTG ...	LSY ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
283893	60	CTG ...	LID ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
2883	123	TTG ...	LLP ...	Ribo-seq	TTG	weak	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
1819937	45	TTG ...	LLF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1819925	60	TTG ...	LLN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
101419	135	CTG ...	LLL ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
293139	48	ATG ...	MGA ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
283903	90	TTG ...	LLS ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
407022	54	TCA ...	SIL ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
905308	33	AAC ...	NKT ...	Ribo-seq	AAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2875	36	GTG ...	VEI ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
2877	69	GTG ...	VEL ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1

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