Transcript 286979

Transcript

ID CARD

MetamORF ID

286979

ENST00000480602

Name

PUM1-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

30995182-31065683

CDS Start-stop positions

31055369-31059566

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:14957

Aliases

ENSG00000134644,
HGNC:14957, KIAA0099, NCBI:9698,
OFF:PUM1, PUM1, PUMH1

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
101782	132	TTG ...	LPG ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, RPE-1
407334	66	GGT ...	GDQ ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116
902349	105	GAT ...	DES ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
286978	33	ATG ...	MAR ...	Ribo-seq	ATG		10	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
2958298	36	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	hES
286984	45	GTG ...	VIN ...	Ribo-seq	GTG		5	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, hES, LCL, MDA-MB-231
481673	84	ATG ...	MNP ...	Ribo-seq	ATG		5	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, HEK293T, hES, MDA-MB-231
286993	69	ATG ...	MDQ ...	Ribo-seq	ATG		5	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, hES, LCL, MDA-MB-231
286987	69	CTG ...	LGD ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, hES, LCL

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