Transcript 286159

Transcript

ID CARD

MetamORF ID

286159

ENST00000350997

Name

FADS1-201

Strand

Biotype

protein_coding

Start-end positions

61799625-61817162

CDS Start-stop positions

61802411-61816929

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

HGNC:3574

Aliases

D5D,
ENSG00000149485, FADS1, FADS6,
FADSD5, HGNC:3574, LLCDL1,
NCBI:3992, OFF:FADS1, TU12

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
528751	30	ATG ...	MQC ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1821299	72	ATG ...	MPF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
533937	192	ATG ...	MTG ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1008241	60	TTG ...	LST ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	guo_2014
294284	216	ATG ...	MSS ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3314635	1506	ATG ...	MGT ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3314680	12	ATG ...	MPA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
1821315	168	CTG ...	LVH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1821305	66	ATG ...	MLR ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1821288	99	CTG ...	LNH ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1821286	39	GTG ...	VWS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1821307	99	ATG ...	MSK ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
286158	45	TTG ...	LST ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative Downstream sORF	HeLa, LCL
1821301	96	ATG ...	MSA ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1821297	45	GTG ...	VVL ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1821295	39	TTG ...	LGS ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
286171	48	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1821293	51	ATG ...	MRK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1821311	108	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1821290	99	TTG ...	LSQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1821313	153	GTG ...	VAS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1821303	54	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1821309	102	CTG ...	LMS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa

Export data