Transcript 285362

Transcript

ID CARD

MetamORF ID

285362

ENST00000534647

Name

CTNND1-238

Strand

Biotype

protein_coding

Start-end positions

57791559-57801794

CDS Start-stop positions

57791641-

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:2515

Aliases

CTNND,
CTNND1, ENSG00000198561, HGNC:2515,
KIAA0384, NCBI:1500, OFF:CTNND1,
p120, p120cas, p120ctn

Chr 11

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2327528	63	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
1505854	165	GTG ...	VIS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
1049499	45	ATG ...	MMG ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293, HFF, MDA-MB-231
1505872	51	GTG ...	VGA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	BJ, HeLa
1319750	150	ATG ...	MPT ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HEK293
2314509	75	CTG ...	LMV ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
2314515	48	ATG ...	MVI ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
2314528	48	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
1505862	126	ATG ...	MWG ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
1505870	33	ATG ...	MCM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	sORF	BJ, MDA-MB-231
2327523	42	ATG ...	MGP ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HFF, MDA-MB-231
1505866	108	CTG ...	LLP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	sORF	BJ, HeLa, MDA-MB-231
2314517	36	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
1505864	114	CTG ...	LAL ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	sORF	BJ, HeLa, MDA-MB-231
528331	33	ATG ...	MGP ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, U2OS
1505850	51	CTG ...	LWR ...	Ribo-seq	CTG		6	sORFs_org_Human	sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1
1505868	87	TTG ...	LRS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
2314526	60	CTG ...	LPV ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	hES, MDA-MB-231
2327526	69	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	MDA-MB-231
285364	66	ATG ...	MAL ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	hES, LCL, MDA-MB-231
2314519	30	GTG ...	VIT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
2327530	51	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
285361	45	ATG ...	MTS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	sORF	BJ, HeLa, LCL, MDA-MB-231, RPE-1
1821033	48	TTG ...	LWR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	sORF	HeLa, MDA-MB-231
1505856	150	ATG ...	MAM ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
1505858	144	ATG ...	MGD ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
2314511	72	ATG ...	MVI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	sORF	HeLa, MDA-MB-231, RPE-1
1505860	135	CTG ...	LVP ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
2327532	39	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2314513	54	ATG ...	MKM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
528329	36	ATG ...	MMG ...	Ribo-seq	ATG		8	sORFs_org_Human	sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, U2OS
1821038	72	CTG ...	LIM ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HeLa, hES, MDA-MB-231
2314500	207	ATG ...	MLH ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	MDA-MB-231, RPE-1
2327520	60	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2314498	213	CTG ...	LWM ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	sORF	MDA-MB-231, RPE-1
1825291	75	CTG ...	LIM ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HeLa, MDA-MB-231

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