Transcript 285 | MetamORF

Transcript

ID CARD

MetamORF ID

285

ENST00000468890

Name

NHLRC2-202

Strand

Biotype

retained_intron

Start-end positions

113854824-113858852

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

HGNC:24731

Aliases

DKFZp779F115,
ENSG00000196865, FLJ20147, FLJ25621,
FLJ33312, HGNC:24731, MGC45492,
NCBI:374354, NHLRC2, OFF:NHLRC2

Chr 10

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
899089	153	CCT ...	PIS ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
899087	54	AGA ...	RRT ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
278507	66	ATG ...	MAE ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, LCL, MDA-MB-231, THP-1
284	42	CTG ...	LGA ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
631745	33	CTG ...	LLH ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
2303293	30	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
289	30	CTG ...	LHK ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231, THP-1
1313994	69	TTG ...	LPD ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, RPE-1
287	168	CTG ...	LNT ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Intronic sORF	Blood, HAP1, HCT116, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1

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