Transcript 284898

Transcript

ID CARD

MetamORF ID

284898

ENST00000526277

Name

CELF1-209

Strand

Biotype

protein_coding

Start-end positions

47488983-47523537

CDS Start-stop positions

-47499523

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:2549

Aliases

BRUNOL2,
CELF1, CUG-BP, CUGBP,
CUGBP1, EDEN-BP, ENSG00000149187,
HGNC:2549, hNab50, NAB50,
NAPOR, NCBI:10658, OFF:CELF1

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284900	33	CTG ...	LSL ...	Ribo-seq	CTG		12	sORFs_org_Human	sORF	BJ, guo_2014, HAP1, HEK293, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2683185	51	GTG ...	VYL ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	sORF	HeLa, RPE-1
1724759	30	GTG ...	VQQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	sORF	Blood, HeLa, RPE-1
284897	33	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	sORF	LCL, MDA-MB-231, RPE-1
1724761	45	TTG ...	LWI ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	sORF	Blood, HeLa, RPE-1
1316679	75	CTG ...	LNI ...	Ribo-seq	CTG		6	sORFs_org_Human	sORF	HEK293, HeLa, RPE-1
1441754	156	GTG ...	VFS ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	HeLa, RPE-1
1505591	39	CTG ...	LCV ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	sORF	BJ, HEK293, HeLa, hES, RPE-1
284902	45	CTG ...	LCC ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF	BJ, HeLa, hES, LCL, MDA-MB-231, RPE-1

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