Transcript 284723

Transcript

ID CARD

MetamORF ID

284723

ENST00000627920

Name

ARFGAP2-229

Strand

Biotype

protein_coding

Start-end positions

47164299-47177125

CDS Start-stop positions

47165482-47176853

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

HGNC:13504

Aliases

ARFGAP2,
ENSG00000149182, FLJ14576, HGNC:13504,
IRZ, NCBI:84364, OFF:ARFGAP2,
Zfp289, ZNF289

Chr 11

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284740	81	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL
284738	39	CTG ...	LTC ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1731419	153	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, RPE-1
284722	33	CTG ...	LGK ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
1820590	42	CTG ...	LHH ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
906591	138	CCG ...	PLG ...	Ribo-seq	CCG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
293631	234	CTG ...	LTC ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, LCL, MDA-MB-231, RPE-1
916120	153	TGG ...	WPT ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284759	66	TTG ...	LCL ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Overlapping sORF Upstream	HEK293, LCL, MM1S, THP-1
916113	42	CCT ...	PLD ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1731393	39	CTG ...	LDP ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231
293633	276	GTG ...	VRR ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, LCL, MDA-MB-231
916118	87	CCT ...	PLA ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284742	45	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
284727	48	GTG ...	VSS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HeLa, LCL, MDA-MB-231, RPE-1
284750	36	CTG ...	LSP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
284729	66	TTG ...	LPS ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
293625	135	TTG ...	LGT ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, Jurkat, LCL, MDA-MB-231, RPE-1
284744	48	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
293641	96	GTG ...	VQN ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HeLa, hES, LCL, MDA-MB-231, THP-1
284748	87	GTG ...	VQN ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
906598	60	ACT ...	TCL ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
293623	123	ATG ...	MEL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, MDA-MB-231
906593	171	CAA ...	QSL ...	Ribo-seq	CAA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
293627	159	GTG ...	VPS ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
293639	63	TTG ...	LTM ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, Jurkat, LCL, MDA-MB-231
293635	54	TTG ...	LVL ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231
293629	198	ATG ...	MRP ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
1505503	48	TTG ...	LAP ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
293637	57	ATG ...	MLV ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
284757	60	CTG ...	LGR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Overlapping sORF Upstream	BJ, HEK293, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
916116	69	ACT ...	TCL ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284746	54	TTG ...	LTM ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, LCL
284725	39	CTG ...	LWL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
293643	132	TTG ...	LIV ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, LCL, MDA-MB-231, RPE-1
906600	78	CCT ...	PLA ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916111	141	ACC ...	TSL ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284734	102	GTG ...	VYL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, MDA-MB-231, RPE-1

Export data