Transcript 284280

Transcript

ID CARD

MetamORF ID

284280

ENST00000525707

Name

CAT-202

Strand

Biotype

processed_transcript

Start-end positions

34461203-34468531

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

HGNC:1516

Aliases

CAT,
ENSG00000121691, HGNC:1516, NCBI:847,
OFF:CAT

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
905885	219	CAG ...	QPS ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
634209	60	TTG ...	LPI ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	ncRNA sORF	MDA-MB-231, THP-1
634218	141	TTG ...	LKV ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, THP-1
284284	39	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	LCL
905881	126	CAA ...	QIT ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
905887	201	CAC ...	HSI ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
284279	39	CTG ...	LSL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HeLa, LCL, MDA-MB-231, THP-1
407192	228	CCC ...	PYR ...	Ribo-seq	CCC		1	sORFs_org_Human	ncRNA sORF	HCT116
941030	282	CTG ...	LEH ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HAP1, HEK293, HeLa
634216	156	CTG ...	LGG ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, HeLa, THP-1
634231	30	CTG ...	LPM ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
905883	228	CCG ...	PEQ ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
634234	33	ATG ...	MHK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HeLa, MDA-MB-231, THP-1
634224	105	TTG ...	LVL ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
1007789	210	GTG ...	VRA ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	ncRNA sORF	guo_2014
634220	135	GTG ...	VVL ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, THP-1
634222	132	GTG ...	VLQ ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
905879	111	TGC ...	CSK ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
915959	276	CAC ...	HSI ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
634211	51	CTG ...	LTL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	ncRNA sORF	MDA-MB-231, THP-1
634214	162	GTG ...	VHL ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	Blood, HeLa, THP-1
634228	81	CTG ...	LPW ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
1007793	189	GTG ...	VLN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	ncRNA sORF	guo_2014
407194	186	TCT ...	SGE ...	Ribo-seq	TCT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1007791	195	GTG ...	VNV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	ncRNA sORF	guo_2014
634226	102	GTG ...	VLR ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
284286	48	ATG ...	MRN ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
905877	210	GCC ...	ANY ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
284282	54	CTG ...	LEK ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1

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