Transcript 283613

Transcript

ID CARD

MetamORF ID

283613

ENST00000530180

Name

SAAL1-205

Strand

Biotype

protein_coding

Start-end positions

18089438-18106069

CDS Start-stop positions

-18106041

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:25158

Aliases

ENSG00000166788,
FLJ41463, HGNC:25158, NCBI:113174,
OFF:SAAL1, SAAL1

Chr 11

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2326170	33	TTG ...	LLH ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
1723680	36	CTG ...	LFP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231
1730830	87	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	Blood
292936	135	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	LCL
915761	54	AGA ...	RLL ...	Ribo-seq	AGA		1	sORFs_org_Human	sORF	Jurkat
1730832	120	ATG ...	MKF ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	Blood
283612	36	TTG ...	LWT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	LCL, MDA-MB-231
292938	138	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	LCL

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