Transcript 283479

Transcript

ID CARD

MetamORF ID

283479

ENST00000529210

Name

COPB1-206

Strand

Biotype

processed_transcript

Start-end positions

14494317-14499846

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:2231

Aliases

COPB,
COPB1, ENSG00000129083, HGNC:2231,
NCBI:1315, OFF:COPB1

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
283478	48	GTG ...	VSR ...	Ribo-seq	GTG	weak	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
527113	102	CTG ...	LVV ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1094480	96	GTG ...	VGH ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, MDA-MB-231, MM1S, RPE-1
406860	282	GGT ...	GEK ...	Ribo-seq	GGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
904726	99	GTA ...	VVG ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
283491	36	GTG ...	VGR ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	BJ, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
633949	129	CTG ...	LHQ ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, MDA-MB-231, MM1S, RPE-1, THP-1
904722	51	CTT ...	LVS ...	Ribo-seq	CTT	strong	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
1504724	150	CTG ...	LRF ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	BJ, hES, MDA-MB-231, MM1S, RPE-1
406862	135	CCA ...	PMD ...	Ribo-seq	CCA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1504728	171	CTG ...	LEP ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	BJ, MDA-MB-231, MM1S, RPE-1
904720	162	AAC ...	NVC ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1504726	153	CTG ...	LLR ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	BJ, hES, MDA-MB-231, MM1S, RPE-1
904708	57	TCT ...	SSG ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
283489	129	TTG ...	LFV ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MM1S
904714	84	GAT ...	DDH ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
406864	117	ACT ...	TAP ...	Ribo-seq	ACT		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
283487	123	GTG ...	VGF ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, LCL, MM1S, RPE-1
904712	78	CAT ...	HHS ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
904710	72	TCG ...	SFC ...	Ribo-seq	TCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
283483	87	GTG ...	VFI ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1
283493	39	GTG ...	VVG ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
283481	66	CTG ...	LAS ...	Ribo-seq	CTG	moderate	23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
904718	42	ACG ...	TCQ ...	Ribo-seq	ACG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
904706	48	TCA ...	SHY ...	Ribo-seq	TCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
904724	93	GGC ...	GHK ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
283485	93	ATG ...	MSV ...	Ribo-seq	ATG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1

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