Transcript 283337

Transcript

ID CARD

MetamORF ID

283337

ENST00000399455

Name

USP47-203

Strand

Biotype

protein_coding

Start-end positions

11842066-11959323

CDS Start-stop positions

11842186-11956175

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:20076

Aliases

ENSG00000170242,
HGNC:20076, NCBI:55031, OFF:USP47,
USP47

Chr 11

ORFs

93 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
283352	39	ATG ...	MLW ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2311404	108	GTG ...	VVM ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
292446	51	TTG ...	LML ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
292566	243	CTG ...	LKD ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
2325465	72	ATG ...	MVD ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
283362	48	CTG ...	LTV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
292546	75	ATG ...	MKE ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2325300	81	ATG ...	MMY ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2325479	135	ATG ...	MRH ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
292423	129	ATG ...	MEP ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2311391	57	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2325435	117	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1723388	33	TTG ...	LLN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2325492	42	ATG ...	MVR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
283380	63	TTG ...	LKP ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
292448	48	ATG ...	MLW ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
283364	42	GTG ...	VEQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
904452	168	GAT ...	DGA ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
2325347	141	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1730519	48	GTG ...	VMS ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
915377	45	ACT ...	TEG ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1824808	36	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
292568	144	TTG ...	LYW ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2325483	111	ATG ...	MTI ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1986773	30	TTG ...	LLE ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative sORF Upstream	HeLa, MDA-MB-231, RPE-1
2311417	54	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
283356	39	GTG ...	VNV ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, LCL
2311396	99	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2311421	30	CTG ...	LLV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
283370	90	ATG ...	MMV ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
292429	48	ATG ...	MHY ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
292540	84	ATG ...	MVL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1819425	51	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
292534	69	GTG ...	VNV ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2311415	66	ATG ...	MNF ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
283401	288	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
292550	48	GTG ...	VEL ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2311400	69	ATG ...	MYK ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
283378	78	ATG ...	MKE ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, LCL
1819427	45	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
283368	93	ATG ...	MMM ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
2311429	39	ATG ...	MKE ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2325494	39	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
283336	63	ATG ...	MLL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, RPE-1
292560	69	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
292570	99	GTG ...	VKS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
904450	33	GAT ...	DDC ...	Ribo-seq	GAT	strong	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
2311423	48	GTG ...	VMS ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
1730523	48	GTG ...	VMM ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1723386	39	CTG ...	LFA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
2325336	219	GTG ...	VVM ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
283372	87	ATG ...	MVL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
2311425	45	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
1723381	36	ATG ...	MSA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2325345	159	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
292542	81	GTG ...	VLM ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2325488	69	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1723379	33	CTG ...	LGK ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
292425	120	TTG ...	LTW ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
283399	297	ATG ...	MQT ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2311398	72	ATG ...	MMY ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
292552	42	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
1730469	186	TTG ...	LIF ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
904463	42	AGC ...	SSG ...	Ribo-seq	AGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
283350	42	TTG ...	LML ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
2325340	213	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
283360	60	CTG ...	LKV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2325481	114	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
292538	87	ATG ...	MMV ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
283354	60	ATG ...	MAQ ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL
292548	60	TTG ...	LKP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
292536	90	ATG ...	MMM ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
283376	81	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
1730521	45	ATG ...	MSS ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
292532	90	ATG ...	MAQ ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1730525	45	ATG ...	MMV ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
292544	78	TTG ...	LMK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
292427	60	CTG ...	LNL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
292564	102	ATG ...	MNT ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2311419	39	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1723383	87	ATG ...	MHL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2311393	42	GTG ...	VIM ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1730389	72	ATG ...	MVN ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
904467	99	TCT ...	SKG ...	Ribo-seq	TCT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
904448	54	TGG ...	WSA ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1819416	33	TTG ...	LII ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
283374	84	GTG ...	VLM ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
2311388	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2325302	78	ATG ...	MYK ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2311406	102	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
292572	90	GTG ...	VGF ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
915375	42	AGC ...	SSG ...	Ribo-seq	AGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
283366	30	ATG ...	MKV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231

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