Transcript 2818 | MetamORF

Transcript

ID CARD

MetamORF ID

2818

ENST00000540430

Name

LDHA-218

Strand

Biotype

protein_coding

Start-end positions

18396266-18408218

CDS Start-stop positions

18396548-18407281

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

HGNC:6535

Aliases

ENSG00000134333,
HGNC:6535, LDHA, NCBI:3939,
OFF:LDHA

Chr 11

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
7857	111	CTG ...	LSW ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S
1319517	144	TTG ...	LSE ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
406956	42	CTC ...	LCS ...	Ribo-seq	CTC	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HCT116, HEK293, Jurkat
292969	66	CTG ...	LIK ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL
2837	51	GTG ...	VLL ...	Ribo-seq	GTG	moderate	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HEK293T, HeLa, hES, LCL, MM1S, U2OS
406962	39	GGG ...	GGS ...	Ribo-seq	GGG	moderate	2	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, HCT116
905079	126	TGT ...	CYW ...	Ribo-seq	TGT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
7855	177	TTG ...	LQS ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, guo_2014, HEK293, HEK293T, HeLa, LCL, MM1S
7859	102	GTG ...	VGP ...	Ribo-seq	GTG		30	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
2835	69	GTG ...	VVF ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MM1S, U2OS
2841	63	ATG ...	MEW ...	Ribo-seq	ATG	moderate	34	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406960	60	AGA ...	RRV ...	Ribo-seq	AGA	weak	4	sORFs_org_Human	Alternative Downstream Overlapping sORF	Breast, HCT116, HEK293, Jurkat
1819784	33	GTG ...	VYK ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
940986	96	GTG ...	VNP ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, hES
1319515	150	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, hES
905086	36	GGA ...	GSK ...	Ribo-seq	GGA	moderate	4	sORFs_org_Human	Alternative Downstream Overlapping sORF	Breast, HeLa, Jurkat, THP-1
409447	90	CCT ...	PQE ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
3201066	198	AAA ...	KPC ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
481883	57	TTG ...	LHF ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
1819779	48	CTG ...	LGK ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
7853	222	TTG ...	LED ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MM1S
915775	192	TGT ...	CYW ...	Ribo-seq	TGT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
2845	54	GTG ...	VQI ...	Ribo-seq	GTG	moderate	24	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S
2843	57	CTG ...	LGY ...	Ribo-seq	CTG	strong	28	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
481876	156	TTG ...	LED ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, MM1S
406958	30	GCG ...	AGA ...	Ribo-seq	GCG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HCT116, HEK293
283696	33	TTG ...	LCS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative Downstream sORF	Blood, HeLa, LCL
1819781	45	ATG ...	MVL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3201069	159	CCG ...	PIP ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3200068	132	AAA ...	KPC ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1819777	99	ATG ...	MDW ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1987057	36	ATG ...	MAF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative sORF Upstream	HeLa, hES
406954	60	GAG ...	EWN ...	Ribo-seq	GAG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
283694	126	TTG ...	LGD ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa, LCL
2833	33	CTG ...	LCH ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	loayza_puch_2016
2839	45	TTG ...	LEA ...	Ribo-seq	TTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HEK293T, HeLa, hES, LCL, MM1S, U2OS
7851	273	CTG ...	LQV ...	Ribo-seq	CTG		10	sORFs_org_Human	InCDS Overlapping sORF	guo_2014, HEK293, HeLa, MM1S
905082	69	AGG ...	RLH ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2817	30	TTG ...	LVP ...	Ribo-seq	TTG	moderate	34	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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