Transcript 278743

Transcript

ID CARD

MetamORF ID

278743

ENST00000569515

Name

MCMBP-205

Strand

Biotype

processed_transcript

Start-end positions

119859050-119892556

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:25782

Aliases

C10orf119,
ENSG00000197771, FLJ13081, HGNC:25782,
MCM-BP, MCMBP, NCBI:79892,
OFF:MCMBP

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405560	105	CAG ...	QDM ...	Ribo-seq	CAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
278742	57	GTG ...	VWG ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
405567	48	CGT ...	RGR ...	Ribo-seq	CGT		4	sORFs_org_Human	ncRNA sORF	BJ, HCT116, HEK293, Jurkat
480971	45	TTG ...	LAQ ...	Ribo-seq	TTG		15	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
405562	117	GTA ...	VIE ...	Ribo-seq	GTA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
899595	282	CAG ...	QGF ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
899599	36	CCA ...	PPA ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
899593	147	AAT ...	NGV ...	Ribo-seq	AAT		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
899590	138	CCT ...	PNS ...	Ribo-seq	CCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
899584	33	AAA ...	KRL ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1631479	63	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293
405558	93	GAC ...	DPE ...	Ribo-seq	GAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
899597	294	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
899586	54	AGT ...	SFT ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
480969	33	ATG ...	MEL ...	Ribo-seq	ATG	strong	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
899602	132	ACT ...	TVA ...	Ribo-seq	ACT		3	sORFs_org_Human	ncRNA sORF	BJ, HEK293, Jurkat
405565	30	AAC ...	NAG ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	HCT116
1134659	33	GTG ...	VKA ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231, RPE-1
1134661	42	TTG ...	LCE ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
524984	51	GTG ...	VRG ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
405569	135	CTG ...	LTV ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	BJ, HCT116, HEK293, HeLa, RPE-1, THP-1

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