Transcript 277579

Transcript

ID CARD

MetamORF ID

277579

ENST00000626968

Name

DPCD-206

Strand

Biotype

protein_coding

Start-end positions

101588309-101608902

CDS Start-stop positions

101588337-101608902

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:24542

Aliases

DKFZP566F084,
DPCD, ENSG00000166171, HGNC:24542,
NCBI:25911, OFF:DPCD, RP11-529I10.4

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405100	63	CGA ...	RVN ...	Ribo-seq	CGA		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
279354	30	ATG ...	MTR ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL
1134231	30	GTG ...	VAD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2301952	39	GTG ...	VPW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
405102	57	AAC ...	NYL ...	Ribo-seq	AAC		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
277583	63	GTG ...	VSL ...	Ribo-seq	GTG		9	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231
279350	99	CTG ...	LVG ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
2902834	84	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
277585	57	CTG ...	LWT ...	Ribo-seq	CTG		9	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231
405751	66	ATT ...	IYS ...	Ribo-seq	ATT		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1983423	30	TTG ...	LSE ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa
277581	72	ATG ...	MSI ...	Ribo-seq	ATG		9	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231
279352	39	CTG ...	LKN ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HeLa, LCL
405098	111	ATT ...	IYS ...	Ribo-seq	ATT		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, HEK293
405093	69	GAT ...	DGG ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
277578	54	CTG ...	LVG ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS

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