Transcript 276457

Transcript

ID CARD

MetamORF ID

276457

ENST00000371703

Name

RPP30-202

Strand

Biotype

protein_coding

Start-end positions

90871716-90902190

CDS Start-stop positions

90871987-90900679

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:17688

Aliases

ENSG00000148688,
HGNC:17688, NCBI:10556, OFF:RPP30,
RPP30, TSG15

Chr 10

ORFs

5 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
276456	87	CTG ...	LRR ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HeLa, hES, LCL, MM1S, RPE-1
526001	33	CTG ...	LPS ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1403026	111	ATG ...	MPE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
1403024	138	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
1403028	102	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293

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