Transcript 275828

Transcript

ID CARD

MetamORF ID

275828

ENST00000463657

Name

ANXA11-208

Strand

Biotype

processed_transcript

Start-end positions

80172834-80205522

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:535

Aliases

ANX11,
ANXA11, ENSG00000122359, HGNC:535,
NCBI:311, OFF:ANXA11

Chr 10

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
896735	93	GGC ...	GAA ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
630897	147	GTG ...	VPR ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, MM1S, RPE-1, THP-1
1499696	75	CTG ...	LLR ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	ncRNA sORF	BJ, MDA-MB-231, RPE-1
2615661	78	ACG ...	TPA ...	Ribo-seq	ACG		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
404713	33	GCT ...	AES ...	Ribo-seq	GCT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
902340	93	ACT ...	TPA ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896737	243	GCT ...	AAA ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1503258	180	GTG ...	VPR ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	BJ, MM1S, RPE-1
2615663	171	CTA ...	LGR ...	Ribo-seq	CTA		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
902343	126	GGC ...	GAA ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
902345	252	GCT ...	AAA ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1402942	90	CTG ...	LYD ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, MM1S
896733	60	ACT ...	TPA ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1503256	189	GTG ...	VPR ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	BJ, MM1S, RPE-1
2615665	210	TGC ...	CPA ...	Ribo-seq	TGC		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
2615659	105	TTC ...	FAP ...	Ribo-seq	TTC		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
1499694	72	CTG ...	LRP ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	ncRNA sORF	BJ, MDA-MB-231
275827	66	GTG ...	VSG ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	BJ, HCT116, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
406257	219	GCT ...	ADG ...	Ribo-seq	GCT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
275830	42	GTG ...	VCV ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896731	72	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
630899	156	GTG ...	VPR ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, MM1S, RPE-1, THP-1
1499698	249	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	BJ
404716	186	GCT ...	ADG ...	Ribo-seq	GCT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat

Export data