Transcript 2736 | MetamORF

Transcript

ID CARD

MetamORF ID

2736

ENST00000534234

Name

COPB1-211

Strand

Biotype

protein_coding

Start-end positions

14476917-14499811

CDS Start-stop positions

-14498928

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:2231

Aliases

COPB,
COPB1, ENSG00000129083, HGNC:2231,
NCBI:1315, OFF:COPB1

Chr 11

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2738	39	ATG ...	MLF ...	Ribo-seq	ATG		12	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
101172	51	ATG ...	MLE ...	Ribo-seq	ATG		12	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1723519	30	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	Blood
1504711	75	GTG ...	VTT ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
1819596	54	TTG ...	LIK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
1730772	108	GTG ...	VHV ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	Blood, MDA-MB-231
2735	36	CTG ...	LFW ...	Ribo-seq	CTG		11	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
2326104	48	GTG ...	VHQ ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
1723500	30	GTG ...	VKP ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	sORF	Blood, HEK293, MDA-MB-231, RPE-1
1723509	54	CTG ...	LLM ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1723521	30	ATG ...	MQV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	Blood, MDA-MB-231
633941	84	TTG ...	LQI ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	sORF	Blood, hES, MDA-MB-231, THP-1
7776	66	CTG ...	LFW ...	Ribo-seq	CTG		5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231
283473	54	CTG ...	LFC ...	Ribo-seq	CTG		11	sORFs_org_Human	sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1632246	36	TTG ...	LET ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	Flp-In_T-REx-293, MDA-MB-231
3200028	30	CAA ...	QGR ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	sORF	HEK293
1723523	39	ATG ...	MRR ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	Blood, MDA-MB-231
283475	33	TTG ...	LNI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	sORF	Blood, HeLa, LCL, MDA-MB-231
1730768	69	ATG ...	MLF ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231
2740	78	GTG ...	VHV ...	Ribo-seq	GTG		18	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
2326102	39	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231
904690	72	AGT ...	SAN ...	Ribo-seq	AGT		1	sORFs_org_Human	sORF	Jurkat
1723515	39	CTG ...	LSM ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231
2311749	75	ATG ...	MLI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
904688	60	GCA ...	AFL ...	Ribo-seq	GCA		1	sORFs_org_Human	sORF	Jurkat
1730765	42	TTG ...	LSL ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	Blood, MDA-MB-231
904696	66	AGC ...	SID ...	Ribo-seq	AGC		1	sORFs_org_Human	sORF	Jurkat
1723513	33	ATG ...	MKI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231
1319448	48	CTG ...	LHQ ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231, MM1S
633938	30	ATG ...	MFG ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, THP-1
1723517	45	ATG ...	MCL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231
1730770	81	ATG ...	MLE ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231
1723506	51	CTG ...	LMS ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	sORF	Blood, HEK293, MDA-MB-231, RPE-1
1723502	36	TTG ...	LFV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	sORF	Blood, HEK293, MDA-MB-231, RPE-1
1723504	48	ATG ...	MSW ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	sORF	Blood, MDA-MB-231, RPE-1

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