Transcript 2710 | MetamORF

Transcript

ID CARD

MetamORF ID

2710

ENST00000532502

Name

FAR1-204

Strand

Biotype

protein_coding

Start-end positions

13719903-13732346

CDS Start-stop positions

13721731-13728774

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:26222

Aliases

ENSG00000197601,
FAR1, FLJ22728, HGNC:26222,
MLSTD2, NCBI:84188, OFF:FAR1,
SDR10E1

Chr 11

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904629	33	ATA ...	IYV ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904635	72	GAA ...	EIS ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
406851	45	GTT ...	VTL ...	Ribo-seq	GTT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
101146	57	TTG ...	LNI ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
915656	36	TCT ...	SEQ ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904616	33	AAC ...	NSS ...	Ribo-seq	AAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
406853	63	GGT ...	GTL ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
7764	60	CTG ...	LKI ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
904622	54	TGT ...	CTA ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
406855	39	ACA ...	TSF ...	Ribo-seq	ACA	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
904618	33	GGG ...	GFG ...	Ribo-seq	GGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904633	45	TGC ...	CKI ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1136339	60	CTG ...	LAH ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
2709	36	TTG ...	LMY ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
2716	57	TTG ...	LWL ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231
2712	33	ATG ...	MYG ...	Ribo-seq	ATG	weak	15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
904625	87	AGA ...	RNV ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1723456	30	CTG ...	LAS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
904639	30	TGT ...	CHT ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904627	54	TCT ...	SEQ ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1819585	42	ATG ...	MIF ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
283454	93	TTG ...	LQD ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
2714	39	TTG ...	LGR ...	Ribo-seq	TTG	strong	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
904631	105	GGC ...	GAF ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
633923	42	ATG ...	MKK ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
904620	36	GAA ...	ECQ ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1819583	57	GTG ...	VQW ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
915654	69	AGA ...	RNV ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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