Transcript 2691 | MetamORF

Transcript

ID CARD

MetamORF ID

2691

ENST00000529813

Name

USP47-208

Strand

Biotype

retained_intron

Start-end positions

11950873-11956945

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

HGNC:20076

Aliases

ENSG00000170242,
HGNC:20076, NCBI:55031, OFF:USP47,
USP47

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1007613	57	CTG ...	LNV ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, HFF, RPE-1
526986	60	GTG ...	VEA ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, MDA-MB-231, RPE-1, U2OS
283418	48	GTG ...	VKS ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231
904498	114	GAT ...	DIS ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
2311464	123	TTG ...	LHI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
1504538	36	TTG ...	LDD ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	BJ, HeLa, HFF, MDA-MB-231
406831	132	AAT ...	NEL ...	Ribo-seq	AAT	strong	1	sORFs_org_Human	Intronic sORF	HCT116
283420	39	GTG ...	VGF ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HeLa, LCL, MDA-MB-231
904500	138	CAA ...	QRN ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
904492	33	TTT ...	FCQ ...	Ribo-seq	TTT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
936433	36	GTG ...	VDE ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Brain, guo_2014, hES
283412	75	TTG ...	LDP ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HeLa, hES, HFF, LCL, U2OS
101124	126	CTG ...	LMK ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1819444	42	ATG ...	MGH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1986808	36	GTG ...	VIF ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Intronic sORF	HeLa, MDA-MB-231
283414	45	TTG ...	LYW ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	BJ, LCL, MDA-MB-231
904494	48	GAA ...	EHF ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
101122	150	TTG ...	LTD ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
283416	51	TTG ...	LES ...	Ribo-seq	TTG		6	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HeLa, hES, HFF, LCL
1504531	39	TTG ...	LQF ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Intronic sORF	BJ, Blood, hES, MDA-MB-231
2690	39	CTG ...	LDG ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Intronic sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3200002	126	ACA ...	TFP ...	Ribo-seq	ACA		1	sORFs_org_Human	Intronic sORF	HEK293
904502	45	ATA ...	IYL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
283410	108	TTG ...	LSR ...	Ribo-seq	TTG		9	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS

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