Transcript 2643 | MetamORF

Transcript

ID CARD

MetamORF ID

2643

ENST00000640650

Name

EIF4G2-232

Strand

Biotype

protein_coding

Start-end positions

10797816-10807295

CDS Start-stop positions

10797816-

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:3297

Aliases

DAP5,
EIF4G2, ENSG00000110321, HGNC:3297,
NAT1, NCBI:1982, OFF:EIF4G2,
p97

Chr 11

ORFs

76 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1723329	66	TTG ...	LCT ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	sORF	Blood, MDA-MB-231
2645	36	GTG ...	VPL ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
101080	48	TTG ...	LIL ...	Ribo-seq	TTG		7	sORFs_org_Human	sORF	Brain, HEK293, hES, HFF, Monocyte
2311318	33	TTG ...	LQL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
2311328	42	GTG ...	VTS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
101090	90	CTG ...	LHE ...	Ribo-seq	CTG	weak	31	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, U2OS
1319234	63	ATG ...	MAQ ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	BJ, HEK293, HFF, MDA-MB-231, RPE-1
1309891	60	ATA ...	ISL ...	Ribo-seq	ATA	weak	1	sORFs_org_Human	sORF	HEK293
101086	36	ATG ...	MSA ...	Ribo-seq	ATG	moderate	20	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
483319	78	ATG ...	MHQ ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, HFF, MDA-MB-231, RPE-1
2632900	60	ATG ...	MVN ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	Monocyte
101084	102	TTG ...	LLR ...	Ribo-seq	TTG		17	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1
1504489	69	ATG ...	MAM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
104729	114	TTG ...	LIL ...	Ribo-seq	TTG		17	sORFs_org_Human	sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
1723335	30	ATG ...	MKI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	sORF	Blood, MDA-MB-231, RPE-1
483317	66	TTG ...	LMA ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, HFF, MDA-MB-231, RPE-1
101082	66	TTG ...	LES ...	Ribo-seq	TTG		13	sORFs_org_Human	sORF	Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, Monocyte, THP-1
7506	168	TTG ...	LLR ...	Ribo-seq	TTG		20	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte, RPE-1
1504487	63	ATG ...	MGD ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
2649	153	ATG ...	MIS ...	Ribo-seq	ATG		11	sORFs_org_Human	sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231
104740	204	GTG ...	VLL ...	Ribo-seq	GTG		30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1510924	189	TTG ...	LED ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	BJ
7512	225	ATG ...	MSM ...	Ribo-seq	ATG		10	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MM1S, Monocyte
483321	108	ATG ...	MLS ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	BJ, HEK293T, HeLa, HFF, MDA-MB-231
1819383	54	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
7520	255	ATG ...	MNL ...	Ribo-seq	ATG		8	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, Monocyte
1723331	42	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	Blood, MDA-MB-231
283309	48	CTG ...	LKS ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	sORF	HEK293, HEK293T, hES, LCL, MDA-MB-231, RPE-1
2616202	114	GGC ...	GKT ...	Ribo-seq	GGC	weak	2	sORFs_org_Human	sORF	HeLa, THP-1
1510922	180	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	BJ
2324760	144	GTG ...	VHN ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	MDA-MB-231
1007588	51	TTG ...	LMA ...	Ribo-seq	TTG		3	sORFs_org_Human	sORF	guo_2014, HeLa, HFF
481800	54	GTG ...	VHL ...	Ribo-seq	GTG		8	sORFs_org_Human	sORF	BJ, Flp-In_T-REx-293, HEK293T, HeLa, loayza_puch_2016, MM1S
3199995	135	AGT ...	SSW ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	sORF	HEK293
7516	231	ATG ...	MLM ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MM1S, Monocyte
3182965	30	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HeLa
2647	144	GTG ...	VKI ...	Ribo-seq	GTG		10	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231
2311320	48	ATG ...	MYW ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	sORF	MDA-MB-231
904381	126	GGA ...	GKP ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	sORF	Jurkat
283303	48	TTG ...	LTM ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	sORF	Blood, HeLa, hES, LCL, MDA-MB-231
1723333	45	GTG ...	VAP ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	sORF	Blood, MDA-MB-231
1504493	144	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	sORF	BJ
104738	174	GTG ...	VHL ...	Ribo-seq	GTG		28	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
3199992	81	AAA ...	KEE ...	Ribo-seq	AAA	strong	1	sORFs_org_Human	sORF	HEK293
2642	30	CTG ...	LSD ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
101088	69	ATG ...	MTT ...	Ribo-seq	ATG	moderate	30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, U2OS
481794	93	ATG ...	MLS ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	BJ, guo_2014, HEK293T, HeLa, HFF
2616199	78	TGC ...	CDW ...	Ribo-seq	TGC		2	sORFs_org_Human	sORF	HeLa, THP-1
1510920	177	CTG ...	LIC ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	BJ
1309889	30	TAT ...	YAL ...	Ribo-seq	TAT	strong	1	sORFs_org_Human	sORF	HEK293
283299	51	TTG ...	LIR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	sORF	BJ, HeLa, LCL
633880	57	TTG ...	LAS ...	Ribo-seq	TTG		8	sORFs_org_Human	sORF	Brain, HEK293, hES, HFF, Monocyte, THP-1
1723325	39	TTG ...	LKK ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	sORF	Blood, hES, MDA-MB-231
1319227	279	CTG ...	LYI ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HEK293
7508	210	GTG ...	VKI ...	Ribo-seq	GTG		11	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte
3199990	63	TGC ...	CTS ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	sORF	HEK293
104731	123	TTG ...	LAS ...	Ribo-seq	TTG		18	sORFs_org_Human	sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
1723340	42	ATG ...	MDQ ...	Ribo-seq	ATG	strong	4	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231
1510918	168	TTG ...	LDK ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	BJ
2616839	93	TGC ...	CDW ...	Ribo-seq	TGC		2	sORFs_org_Human	sORF	HeLa, THP-1
904378	45	CAA ...	QLR ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	sORF	Jurkat
7514	228	TTG ...	LMS ...	Ribo-seq	TTG		9	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MM1S, Monocyte
1723327	54	ATG ...	MTW ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	sORF	Blood, hES, MDA-MB-231
1319225	258	CTG ...	LNV ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, HeLa
104736	150	CTG ...	LLA ...	Ribo-seq	CTG		28	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
481791	63	ATG ...	MHQ ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	guo_2014, HEK293T, HeLa, hES, HFF
7510	219	ATG ...	MIS ...	Ribo-seq	ATG		11	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte
2311324	93	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	sORF	MDA-MB-231
7518	249	TTG ...	LKT ...	Ribo-seq	TTG		8	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, Monocyte
1007586	48	ATG ...	MAQ ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	guo_2014, HeLa, HFF
406816	99	AAT ...	NGF ...	Ribo-seq	AAT	strong	8	sORFs_org_Human	sORF	BJ, Breast, HCT116, HEK293, HeLa, Jurkat, THP-1
283307	39	TTG ...	LTS ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	sORF	HEK293, HEK293T, hES, LCL, MDA-MB-231, RPE-1
283301	33	GTG ...	VEM ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	sORF	Blood, HeLa, LCL, RPE-1
104733	132	TTG ...	LES ...	Ribo-seq	TTG		19	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
1504491	138	CTG ...	LVQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	sORF	BJ
3199988	57	TCT ...	SMT ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	sORF	HEK293

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