Transcript 2582 | MetamORF

Transcript

ID CARD

MetamORF ID

2582

ENST00000634348

Name

SRSF4-208

Strand

Biotype

retained_intron

Start-end positions

29147853-29173494

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

HGNC:10786

Aliases

ENSG00000116350,
HGNC:10786, NCBI:6429, OFF:SRSF4,
SFRS4, SRP75, SRSF4

Chr 1

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1822758	99	ATG ...	MAT ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Intronic sORF	HeLa
1822753	57	TTG ...	LVA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2581	240	CTG ...	LAP ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, hES
407107	120	TCA ...	SES ...	Ribo-seq	TCA	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
2592	282	CTG ...	LNP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, hES, LCL, MDA-MB-231
901460	168	ACC ...	TRS ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
407093	111	CGC ...	RSR ...	Ribo-seq	CGC	weak	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
3199537	57	AGG ...	RSA ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	Intronic sORF	HEK293
901435	129	GGT ...	GPS ...	Ribo-seq	GGT	weak	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
901433	105	CTT ...	LPD ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1822747	90	TTG ...	LKI ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
407120	237	CAT ...	HAK ...	Ribo-seq	CAT	strong	1	sORFs_org_Human	Intronic sORF	HCT116
901454	132	CCA ...	PNL ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
2596	255	GTG ...	VSK ...	Ribo-seq	GTG	weak	26	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1822735	96	ATG ...	MAH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1822750	39	GTG ...	VIG ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
901427	39	CCC ...	PSR ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
2594	291	ATG ...	MPS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, hES, LCL, MDA-MB-231
1822730	30	TTG ...	LIP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2588	243	ATG ...	MLA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, hES
901466	300	AGC ...	SGN ...	Ribo-seq	AGC	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
901458	204	CCA ...	PIP ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
2590	249	GTG ...	VRM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HEK293T, hES
1822760	105	CTG ...	LAM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa

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