Transcript 2475 | MetamORF

Transcript

ID CARD

MetamORF ID

2475

ENST00000532191

Name

TPP1-214

Strand

Biotype

processed_transcript

Start-end positions

6615216-6615760

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:2073

Aliases

CLN2,
ENSG00000166340, HGNC:2073, NCBI:1200,
OFF:TPP1, SCAR7, TPP1

Chr 11

ORFs

74 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1819098	126	GTG ...	VLF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HeLa, hES
1819113	75	GTG ...	VAR ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231
282848	57	TTG ...	LAF ...	Ribo-seq	TTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
904002	54	ACT ...	TGW ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
903981	39	CAG ...	QIL ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
2487	180	GTG ...	VSA ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
100952	144	CTG ...	LPH ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
936286	219	GTG ...	VFG ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	Brain
2481	57	GTG ...	VTG ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
406719	75	CCT ...	PGW ...	Ribo-seq	CCT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
282854	54	ATG ...	MRT ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	BJ, HeLa, LCL, MDA-MB-231, Monocyte, RPE-1
100949	135	GTG ...	VHT ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
633741	60	ATG ...	MAT ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	Blood, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
903986	120	CCG ...	PSA ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
936288	126	GTG ...	VAA ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HFF
936290	174	CTG ...	LPP ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HeLa, hES, HFF
633761	78	ATG ...	MRD ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	Blood, MDA-MB-231, THP-1
903996	33	GTT ...	VSA ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
282850	72	GTG ...	VAA ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HeLa, hES, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
282858	63	ATG ...	MEM ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	BJ, Blood, LCL, MDA-MB-231, Monocyte, RPE-1
406713	66	CCA ...	PDA ...	Ribo-seq	CCA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
633745	72	CTG ...	LHF ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
406715	126	GTA ...	VLP ...	Ribo-seq	GTA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1315976	87	GTG ...	VSS ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
903973	81	TAC ...	YTL ...	Ribo-seq	TAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1315980	99	GTG ...	VKP ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
1504241	63	TTG ...	LAA ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	BJ, RPE-1
903983	96	CAG ...	QKF ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
903993	48	GGA ...	GTP ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1504244	213	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	BJ, MDA-MB-231, RPE-1
903998	84	ACA ...	TGS ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat
904014	162	CTC ...	LSN ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
406717	93	GCT ...	AGA ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	HCT116
1819111	78	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HeLa
526853	192	CTG ...	LSS ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HeLa, hES, HFF, U2OS
282852	90	ATG ...	MST ...	Ribo-seq	ATG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HeLa, hES, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
3015749	108	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	MM1S
904008	105	TCA ...	SMP ...	Ribo-seq	TCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
633749	90	GTG ...	VPT ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
100947	138	GTG ...	VGG ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, hES, HFF, Monocyte, THP-1, U2OS
2483	75	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
282856	57	ATG ...	MMR ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	BJ, HeLa, LCL, MDA-MB-231, Monocyte, RPE-1
904000	189	GAG ...	EHR ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
481748	57	CTG ...	LPR ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
2477	60	TTG ...	LTP ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
904010	111	GAT ...	DED ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
903989	216	GAG ...	ELQ ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1007465	99	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	guo_2014
282846	36	GTG ...	VAA ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819100	129	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HeLa, hES
2310939	33	ATG ...	MSQ ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231, RPE-1
904012	120	TAT ...	YGD ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
633751	96	GTG ...	VAV ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
100945	114	CTG ...	LDE ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
282860	126	GTG ...	VSY ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
100940	42	CTG ...	LNR ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1819104	36	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
1315974	72	TTG ...	LVD ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
633753	102	ATG ...	MPV ...	Ribo-seq	ATG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
903979	30	CCA ...	PMM ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
633743	63	CTG ...	LMA ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
1819106	39	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HeLa
1136213	156	CTG ...	LPS ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
903991	42	CCC ...	PNF ...	Ribo-seq	CCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
903977	87	CGC ...	RKY ...	Ribo-seq	CGC		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
1315978	90	GTG ...	VVS ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
100938	33	TTG ...	LPM ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
633747	78	ATG ...	MWL ...	Ribo-seq	ATG		10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
100954	165	CTG ...	LLS ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2493	180	CTG ...	LQW ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1315972	69	GTG ...	VDF ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
2485	123	CTG ...	LPS ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, U2OS
2474	30	CTG ...	LPS ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HFF, MDA-MB-231
3015747	105	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	MM1S

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