Transcript 246765

Transcript

ID CARD

MetamORF ID

246765

ENST00000373742

Name

PUM1-203

Strand

Biotype

protein_coding

Start-end positions

30933080-31065785

CDS Start-stop positions

30933211-31065785

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

HGNC:14957

Aliases

ENSG00000134644,
HGNC:14957, KIAA0099, NCBI:9698,
OFF:PUM1, PUM1, PUMH1

Chr 1

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2521519	216	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
481536	42	ATG ...	MAS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, MDA-MB-231, RPE-1
246764	123	TTG ...	LTW ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL
2257378	93	GTG ...	VEE ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
246854	108	TTG ...	LLW ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL
2257283	138	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2323179	30	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1482796	174	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
3196661	78	GCA ...	AML ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2257232	84	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
246857	123	ATG ...	MIF ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
246860	51	CTG ...	LGI ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, hES, LCL, MDA-MB-231
2257281	129	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1702696	201	TTG ...	LSY ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231

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