Transcript 2448 | MetamORF

Transcript

ID CARD

MetamORF ID

2448

ENST00000640959

Name

AC084337.2-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

6481501-6498239

CDS Start-stop positions

6481517-6482221

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

AC084337.2

Aliases

AC084337.2

Chr 11

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
903947	30	CAG ...	QPG ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	CDS NMD sORF	Jurkat
2462	51	GTG ...	VPG ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	CDS NMD sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, THP-1
2454	129	CTG ...	LCW ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231
903927	33	AGC ...	SSS ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
2460	93	CTG ...	LVQ ...	Ribo-seq	CTG	strong	22	sORFs_org_Human	CDS NMD sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819074	87	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
903929	156	GCT ...	AGK ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	CDS NMD sORF	Jurkat
2452	168	CTG ...	LHS ...	Ribo-seq	CTG	weak	22	sORFs_org_Human	CDS NMD sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903943	33	GGC ...	GCL ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
903931	120	GAA ...	EAD ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
903949	96	TCT ...	SLH ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	Jurkat
1819076	30	ATG ...	MQP ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
1819072	30	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
2447	39	CTG ...	LCA ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
282809	141	CTG ...	LSA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231
406704	267	CGT ...	RDF ...	Ribo-seq	CGT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116
2456	147	CTG ...	LIH ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	CDS NMD sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903937	81	CGT ...	RAA ...	Ribo-seq	CGT	moderate	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
903945	54	GCT ...	AVP ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	CDS NMD sORF	Jurkat
282805	51	CTG ...	LLP ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903935	201	TCA ...	SWP ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	Jurkat
481743	63	ATG ...	MRR ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
282813	45	ATG ...	MDP ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, LCL
903939	177	TGC ...	CLP ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	Jurkat
2450	57	GTG ...	VCP ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HEK293, HeLa, HFF, LCL, MM1S, RPE-1
1094266	30	GTG ...	VTS ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
903941	45	CGC ...	RRL ...	Ribo-seq	CGC	weak	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
2458	111	GTG ...	VQL ...	Ribo-seq	GTG	weak	23	sORFs_org_Human	CDS NMD sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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