Transcript 2441 | MetamORF

Transcript

ID CARD

MetamORF ID

2441

ENST00000614314

Name

ARFIP2-210

Strand

Biotype

protein_coding

Start-end positions

6474683-6481479

CDS Start-stop positions

6477113-6480421

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:17160

Aliases

ARFIP2,
ENSG00000132254, HGNC:17160, NCBI:23647,
OFF:ARFIP2, POR1

Chr 11

ORFs

74 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
294683	147	CTG ...	LAL ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
282799	51	ATG ...	MQE ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1
916544	87	CCA ...	PQW ...	Ribo-seq	CCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
294679	135	ATG ...	MRW ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
1504196	51	GTG ...	VRR ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, RPE-1
294681	141	CTG ...	LEM ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
903889	90	TTG ...	LLG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, Jurkat, MDA-MB-231
294673	102	TTG ...	LTS ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
903913	39	CCC ...	PYP ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1504192	57	TTG ...	LAT ...	Ribo-seq	TTG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1504188	108	ATG ...	MLC ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1
282803	45	GTG ...	VAM ...	Ribo-seq	GTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
903923	57	GAT ...	DRD ...	Ribo-seq	GAT	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1512538	30	ATG ...	MGW ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1
294677	117	TTG ...	LLE ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
294675	114	CTG ...	LEK ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
1512533	99	TTG ...	LLT ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1
903907	45	CAG ...	QND ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
534197	117	GTG ...	VVD ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1, U2OS
481736	42	TTG ...	LTS ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, hES, MDA-MB-231, RPE-1
1049674	39	CTG ...	LKM ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, RPE-1
903909	60	CCA ...	PAL ...	Ribo-seq	CCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2443	36	TTG ...	LVE ...	Ribo-seq	TTG	strong	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
903891	102	GCT ...	ALP ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1723045	54	TTG ...	LSL ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
916550	174	CCC ...	PRA ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
2310814	87	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1
534195	108	TTG ...	LRV ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1, U2OS
1512540	33	ATG ...	MMG ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1
2803270	39	GTG ...	VLG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
1504190	48	ATG ...	MQR ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1512531	96	CTG ...	LTS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1
409668	114	GTC ...	VDL ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
903893	117	GCA ...	AQA ...	Ribo-seq	GCA	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
294671	45	ATG ...	MRL ...	Ribo-seq	ATG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, Jurkat, LCL, MDA-MB-231, THP-1
903919	96	AAT ...	NTF ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
2310816	120	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1
1504186	105	CTG ...	LCP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1819053	33	TTG ...	LCL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1819059	66	ATG ...	MTK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1504194	33	ATG ...	MRV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, RPE-1
903917	81	CAT ...	HDG ...	Ribo-seq	CAT	strong	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, Jurkat, THP-1
534199	129	ATG ...	MQG ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1, U2OS
1512523	66	ATG ...	MRS ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1
941381	117	ATG ...	MHW ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, MDA-MB-231, RPE-1
916538	120	CCA ...	PAL ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2310821	54	TTG ...	LCL ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	HeLa, hES, MDA-MB-231, RPE-1
1986478	81	CTG ...	LEM ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1
903921	153	ACT ...	TGA ...	Ribo-seq	ACT		1	sORFs_org_Human	sORF Upstream	Jurkat
903915	108	CCA ...	PQW ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
409670	189	ACT ...	TGA ...	Ribo-seq	ACT		5	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293, HeLa, Jurkat, THP-1
2803268	36	CTG ...	LGW ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
294685	180	CTG ...	LAA ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
1512521	48	ATG ...	MWP ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1504183	87	CTG ...	LGT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, MDA-MB-231, RPE-1
534201	39	CTG ...	LPG ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, U2OS
916536	126	AGA ...	RPS ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
481740	57	TTG ...	LLE ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, hES, MDA-MB-231, RPE-1
1819055	45	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1819057	66	ATG ...	MTE ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
903895	123	GGT ...	GDA ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903899	39	GAC ...	DHG ...	Ribo-seq	GAC	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
2445	78	GTG ...	VHK ...	Ribo-seq	GTG		14	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
534193	102	GTG ...	VPR ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1, U2OS
481738	54	CTG ...	LEK ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, hES, MDA-MB-231, RPE-1
941377	105	ATG ...	MPL ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, MDA-MB-231, RPE-1
100928	30	CTG ...	LVM ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, MM1S, RPE-1
941379	108	GTG ...	VMP ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, MDA-MB-231, RPE-1
1986476	75	ATG ...	MRW ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1
903903	36	CAT ...	HWS ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903901	30	TCA ...	SPR ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1723050	48	CTG ...	LVA ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, RPE-1
2440	63	TTG ...	LSC ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231, RPE-1
903905	39	CTC ...	LTD ...	Ribo-seq	CTC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat

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