Transcript 2369 | MetamORF

Transcript

ID CARD

MetamORF ID

2369

ENST00000533495

Name

RRM1-213

Strand

Biotype

nonsense_mediated_decay

Start-end positions

4116243-4138875

CDS Start-stop positions

4118336-4119946

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:10451

Aliases

ENSG00000167325,
HGNC:10451, NCBI:6240, OFF:RRM1,
RRM1

Chr 11

ORFs

69 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
903836	57	GTT ...	VTP ...	Ribo-seq	GTT		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, Jurkat
903832	69	GAT ...	DMW ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2411	123	CTG ...	LGN ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HEK293, HeLa, hES, HFF
2425	42	GTG ...	VGN ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
903850	57	AAC ...	NLT ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2415	60	TTG ...	LNL ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
2409	90	CTG ...	LLR ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
406691	78	GAA ...	EEK ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116
282528	60	TTG ...	LYS ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, LCL
406687	210	ATC ...	ISQ ...	Ribo-seq	ATC		2	sORFs_org_Human	Downstream NMD sORF	HCT116, HEK293
2419	30	ATG ...	MQW ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, THP-1
282573	105	TTG ...	LSC ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1
903858	45	TGG ...	WQL ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
406683	33	ACC ...	TLL ...	Ribo-seq	ACC	moderate	2	sORFs_org_Human	Downstream NMD sORF	HCT116, HEK293
2435	39	TTG ...	LEN ...	Ribo-seq	TTG	moderate	31	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2413	69	ATG ...	MSP ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
2391	102	TTG ...	LKL ...	Ribo-seq	TTG		19	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1722869	84	TTG ...	LTQ ...	Ribo-seq	TTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1722867	87	CTG ...	LLT ...	Ribo-seq	CTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
282571	138	TTG ...	LVI ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, LCL
282592	81	CTG ...	LCG ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
903826	108	AGA ...	RSL ...	Ribo-seq	AGA		2	sORFs_org_Human	Downstream NMD sORF	HEK293, Jurkat
2427	39	CTG ...	LRE ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
903842	69	TGG ...	WYK ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Downstream NMD sORF	Jurkat
100911	144	TTG ...	LNI ...	Ribo-seq	TTG		6	sORFs_org_Human	Downstream NMD sORF	HEK293, HeLa
2405	63	ATG ...	MLL ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
903838	48	ACC ...	TYG ...	Ribo-seq	ACC		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, Jurkat
903860	36	AGA ...	REV ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
903840	45	GAA ...	EGS ...	Ribo-seq	GAA		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
282588	69	CTG ...	LLF ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, HFF, LCL
2397	66	GTG ...	VTL ...	Ribo-seq	GTG		18	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1
282560	36	TTG ...	LGY ...	Ribo-seq	TTG	strong	8	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HEK293, HEK293T, LCL, MDA-MB-231, RPE-1
2403	78	GTG ...	VEC ...	Ribo-seq	GTG		20	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
2407	114	TTG ...	LPR ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
2401	75	ATG ...	MIC ...	Ribo-seq	ATG		20	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
903830	51	AGC ...	SRA ...	Ribo-seq	AGC		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
903856	87	ATA ...	IKL ...	Ribo-seq	ATA	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, Jurkat
481715	42	TTG ...	LEL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HEK293, HEK293T, MDA-MB-231, RPE-1
903828	75	AAG ...	KPA ...	Ribo-seq	AAG		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
2423	219	GTG ...	VWE ...	Ribo-seq	GTG		17	sORFs_org_Human	Downstream NMD sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1
2421	240	CTG ...	LKQ ...	Ribo-seq	CTG		21	sORFs_org_Human	Downstream NMD sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1
903834	66	GGA ...	GML ...	Ribo-seq	GGA		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, Jurkat
282569	30	ATG ...	MRA ...	Ribo-seq	ATG		15	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
282580	48	CTG ...	LEG ...	Ribo-seq	CTG		8	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, HeLa, LCL
2395	84	GTG ...	VLW ...	Ribo-seq	GTG		20	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
100907	57	CTG ...	LFS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
903846	162	CTT ...	LIA ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
903848	129	CAG ...	QIL ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2399	60	TTG ...	LPR ...	Ribo-seq	TTG		15	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1
3199940	36	GAC ...	DWK ...	Ribo-seq	GAC		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
481704	141	TTG ...	LIS ...	Ribo-seq	TTG		9	sORFs_org_Human	InCDS NMD Overlapping sORF	guo_2014, HAP1, HEK293, HEK293T, HeLa, HFF, Jurkat
903787	159	ACT ...	TLK ...	Ribo-seq	ACT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
406689	168	GCT ...	AFI ...	Ribo-seq	GCT		1	sORFs_org_Human	Downstream NMD sORF	HCT116
2417	84	TTG ...	LKD ...	Ribo-seq	TTG		26	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3305179	228	ATG ...	MKD ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
282578	54	ATG ...	MGL ...	Ribo-seq	ATG		11	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, HeLa, HFF, LCL
903822	42	AGG ...	RSG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
406666	135	TCT ...	SKS ...	Ribo-seq	TCT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116
903854	96	AGC ...	SNF ...	Ribo-seq	AGC	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2433	48	GTG ...	VCS ...	Ribo-seq	GTG	moderate	33	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3199945	147	TCT ...	SLN ...	Ribo-seq	TCT		1	sORFs_org_Human	Downstream NMD sORF	HEK293
2393	87	ATG ...	MVL ...	Ribo-seq	ATG		19	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
2431	186	TTG ...	LKT ...	Ribo-seq	TTG	moderate	29	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903820	54	AAT ...	NWG ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
903864	99	GAA ...	EKV ...	Ribo-seq	GAA	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, Jurkat
903866	57	GCA ...	AAM ...	Ribo-seq	GCA	strong	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2368	33	ATG ...	MTA ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231
903852	33	ATT ...	IIA ...	Ribo-seq	ATT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2429	30	GTG ...	VLS ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1

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