Transcript 2324 | MetamORF

Transcript

ID CARD

MetamORF ID

2324

ENST00000533217

Name

RHOG-204

Strand

Biotype

protein_coding

Start-end positions

3827445-3830651

CDS Start-stop positions

3827563-3828138

CDS Relative positions

193-768

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:672

Aliases

ARHG,
ENSG00000177105, HGNC:672, MGC125835,
MGC125836, NCBI:391, OFF:RHOG,
RhoG, RHOG

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
903680	150	AGA ...	RAS ...	Ribo-seq	AGA	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
633622	33	CTG ...	LFL ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, Monocyte, THP-1
633620	33	GTG ...	VAS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, HFF, MDA-MB-231, RPE-1, THP-1
1818968	39	TTG ...	LVP ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2323	42	CTG ...	LMC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
282478	126	GTG ...	VMG ...	Ribo-seq	GTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
903678	114	TGG ...	WAR ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282474	117	CTG ...	LWA ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
2688673	276	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	MM1S, RPE-1
282476	123	ATG ...	MGL ...	Ribo-seq	ATG	strong	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
282480	165	CTG ...	LHP ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2326	90	ATG ...	MRT ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
526773	183	CTG ...	LPP ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
406635	207	GGG ...	GVQ ...	Ribo-seq	GGG	strong	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
282470	186	CTG ...	LRA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
903673	87	ACA ...	TQL ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
406637	96	CTG ...	LQP ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HCT116, HEK293, HeLa, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903669	69	CCA ...	PKS ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282466	108	TTG ...	LPV ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1511754	285	TTG ...	LTT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, MM1S
282468	168	ATG ...	MTA ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
903671	60	TTT ...	FPQ ...	Ribo-seq	TTT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
406633	96	TCA ...	SSA ...	Ribo-seq	TCA	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
903667	198	ACC ...	TCG ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282472	30	GTG ...	VGH ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1722780	39	ATG ...	MCP ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231

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