Transcript 2274 | MetamORF

Transcript

ID CARD

MetamORF ID

2274

ENST00000542507

Name

YTHDF2-209

Strand

Biotype

protein_coding

Start-end positions

28736621-28769774

CDS Start-stop positions

28737121-28768952

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:31675

Aliases

CAHL,
ENSG00000198492, HGNC:31675, HGRG8,
NCBI:51441, NY-REN-2, OFF:YTHDF2,
YTHDF2

Chr 1

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2957633	129	TTG ...	LVA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	hES
2311	39	GTG ...	VGS ...	Ribo-seq	GTG	strong	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
900727	120	GTT ...	VLI ...	Ribo-seq	GTT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2293	102	GTG ...	VGL ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
285272	30	ATG ...	MRP ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
2295	96	TTG ...	LTS ...	Ribo-seq	TTG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
285316	42	CTG ...	LGS ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2297	42	CTG ...	LDI ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1729293	93	CTG ...	LRT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa
2280	48	GTG ...	VKL ...	Ribo-seq	GTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
2273	123	ATG ...	MHI ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
900688	69	TGC ...	CHV ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2276	114	CTG ...	LPC ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
101005	30	ATG ...	MDL ...	Ribo-seq	ATG	strong	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
900710	69	ACA ...	TAE ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
900698	99	CAC ...	HSH ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2291	123	ATG ...	MVL ...	Ribo-seq	ATG	strong	18	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
900719	147	GTA ...	VAL ...	Ribo-seq	GTA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2319	30	GTG ...	VDT ...	Ribo-seq	GTG	strong	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
900776	72	ACG ...	TGK ...	Ribo-seq	ACG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
101036	36	CTG ...	LES ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
285264	36	TTG ...	LPM ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
900686	78	TGC ...	CIY ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1729290	66	TTG ...	LEL ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES
407010	33	CTG ...	LRR ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Breast, HAP1, HCT116, HEK293, HeLa, hES, MM1S, RPE-1, U2OS
2287	30	ATG ...	MQC ...	Ribo-seq	ATG	weak	16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
900800	45	TCA ...	SVS ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2321	30	GTG ...	VDF ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
2545986	36	TTG ...	LLA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2309	45	GTG ...	VAV ...	Ribo-seq	GTG	strong	11	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
101030	51	ATG ...	MDS ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
101028	54	TTG ...	LMD ...	Ribo-seq	TTG	weak	12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
900734	108	GTA ...	VTS ...	Ribo-seq	GTA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
900694	93	TAC ...	YPV ...	Ribo-seq	TAC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
900700	75	TTA ...	LWT ...	Ribo-seq	TTA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2957629	132	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	hES
900731	78	GAA ...	EIT ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2303	39	TTG ...	LQK ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES
2289	132	TTG ...	LVS ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
2278	69	TTG ...	LAS ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, hES, LCL, MDA-MB-231, RPE-1
2282	42	CTG ...	LLG ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
900680	33	TTA ...	LLE ...	Ribo-seq	TTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2317	42	GTG ...	VST ...	Ribo-seq	GTG	weak	23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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