Transcript 2222 | MetamORF

Transcript

ID CARD

MetamORF ID

2222

ENST00000481386

Name

CD81-206

Strand

Biotype

retained_intron

Start-end positions

2396313-2397299

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:1701

Aliases

CD81,
ENSG00000110651, HGNC:1701, NCBI:975,
OFF:CD81, TAPA-1, TAPA1,
TSPAN28

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2616152	66	CCG ...	PEQ ...	Ribo-seq	CCG	moderate	3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, THP-1
100807	78	GTG ...	VLW ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa, LCL
903403	33	TGC ...	CCG ...	Ribo-seq	TGC	weak	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
1818812	177	CTG ...	LQC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
903401	39	TGT ...	CTS ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1818808	234	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Intronic sORF	HeLa
100799	42	CTG ...	LAT ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF
2224	60	ATG ...	MTS ...	Ribo-seq	ATG	weak	31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
2226	48	CTG ...	LSM ...	Ribo-seq	CTG	moderate	33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
100802	108	CTG ...	LYL ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, HFF
1818810	48	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
3199909	144	TGC ...	CHQ ...	Ribo-seq	TGC		1	sORFs_org_Human	Intronic sORF	HEK293
2221	102	GTG ...	VPG ...	Ribo-seq	GTG	weak	31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, RPE-1, THP-1, U2OS
1818818	75	TTG ...	LGF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2228	39	GTG ...	VLC ...	Ribo-seq	GTG	moderate	33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1818816	39	GTG ...	VYI ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
2230	36	CTG ...	LCC ...	Ribo-seq	CTG	moderate	33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
100809	75	CTG ...	LWH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa, LCL

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